Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31159
         (823 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    29   1.1  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    27   2.4  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    26   5.6  
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran...    26   5.6  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   7.4  
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po...    26   7.4  

>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = +1

Query: 367 RSEATKTFEDETRRIRADTAALIHRARSVVPRAKSLSPLDTIYSYSYGEPIPYRFSNDAY 546
           ++  +K +ED T    A +    +  R  + R+++L P   +  Y YG+P P R S  A 
Sbjct: 178 KNHLSKIYEDHTSEKGASSVISSNITRQGIKRSRTL-PW-AVDPYRYGDPDPKRTSTSAD 235

Query: 547 IAK 555
           I++
Sbjct: 236 ISQ 238


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 704 QGAQHQG*REPALVLPEKKARGRP 775
           +G+  Q    P +VLP K+ RGRP
Sbjct: 214 EGSSSQNGLSPLVVLPAKRGRGRP 237


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +2

Query: 482 STPSTHIHTANRSRTVSAMTLTLLSFWCPYAASGI--ASTIFPSITSQPRSSLDAATS 649
           STPST I T+N S  VS  T + L    P  +S +   ST  P++T     S  + TS
Sbjct: 538 STPSTTIPTSNSS--VSLQTSSSLIISSPIISSSLTATSTSTPALTHSITPSNTSYTS 593


>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 516

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +2

Query: 458 RAPSPYHHSTPSTHIHTANRSRTVSA-MTLTLLSFWCPYAASGIASTIFPSITSQPRS 628
           RA S    S+P    H+ + S+++++ M +   S    YAA+ + ST F  +T   R+
Sbjct: 202 RAKSTESTSSPELS-HSLDSSKSIASDMPIHRASHTTGYAAASLTSTSFTPVTKNERA 258


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 593  TIFPSITSQPRSSLDAATSRACTTPVKKGFF 685
            ++ PS+  QP SS+  AT+ + T P  +  F
Sbjct: 1496 SMIPSVAQQPPSSVAPATAPSSTLPPSQSSF 1526


>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 467

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 822 LAFQGTSLTVHSGGPDGRPRAFFSG 748
           LAFQ   + V  G  D R + +FSG
Sbjct: 287 LAFQQARINVQQGFSDSRAKRYFSG 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,214,523
Number of Sequences: 5004
Number of extensions: 64611
Number of successful extensions: 189
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)