Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31159
(823 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1103 + 9085156-9085602 34 0.16
12_02_0285 - 16828173-16828661 33 0.27
12_02_0284 - 16791153-16791212,16791392-16791925,16792266-167926... 33 0.27
12_02_0634 + 21416205-21416954 32 0.48
12_02_0828 - 23502276-23503472,23503568-23504002,23504097-235042... 31 0.84
06_03_0147 + 17236158-17236808 31 1.1
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384... 30 2.6
09_02_0204 - 5768596-5768793,5769857-5770006,5770407-5770583 29 3.4
04_04_1633 + 34928139-34928511,34928700-34928774,34929385-349294... 29 3.4
03_05_0257 + 22439915-22440275,22440280-22440627,22440962-224410... 29 3.4
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 29 3.4
08_02_0463 + 17450935-17451180 29 4.5
06_03_1195 + 28311450-28312294,28312418-28312966,28314319-28314499 29 5.9
03_05_0576 + 25765137-25766420 29 5.9
02_01_0390 - 2824585-2825307,2828206-2828460,2829006-2829107,282... 29 5.9
12_01_0598 + 4890006-4890290,4890901-4890987 28 7.8
07_01_0860 - 7142913-7144895 28 7.8
01_06_0187 - 27296834-27296980,27297567-27297731,27297820-272979... 28 7.8
>06_01_1103 + 9085156-9085602
Length = 148
Score = 33.9 bits (74), Expect = 0.16
Identities = 24/73 (32%), Positives = 31/73 (42%)
Frame = -1
Query: 259 DAAHQGTSRVELPTEMSDGKSVQPARASARNRCTGYDSTGAETIGSTLKTEASRCRWTCR 80
D + + P EMS + V+PARA+ RC+G + E I SR RW R
Sbjct: 56 DVGRRSGAATGQPEEMSTRRKVRPARATVFRRCSGEE----EVIPGMRAASRSRGRWWRR 111
Query: 79 ADASCRSHSRIPW 41
A R R W
Sbjct: 112 RPA-LRQGDRGGW 123
>12_02_0285 - 16828173-16828661
Length = 162
Score = 33.1 bits (72), Expect = 0.27
Identities = 22/61 (36%), Positives = 28/61 (45%)
Frame = -1
Query: 223 PTEMSDGKSVQPARASARNRCTGYDSTGAETIGSTLKTEASRCRWTCRADASCRSHSRIP 44
P EMS + V+PARA+ RC+G + E + SR RW R A CR
Sbjct: 37 PEEMSTRRKVRPARATVFRRCSGEE----EVMPGMRAASWSRGRWWRRRPA-CRQGDGGD 91
Query: 43 W 41
W
Sbjct: 92 W 92
>12_02_0284 -
16791153-16791212,16791392-16791925,16792266-16792637,
16793754-16794105,16794107-16794795,16821179-16821574
Length = 800
Score = 33.1 bits (72), Expect = 0.27
Identities = 22/61 (36%), Positives = 28/61 (45%)
Frame = -1
Query: 223 PTEMSDGKSVQPARASARNRCTGYDSTGAETIGSTLKTEASRCRWTCRADASCRSHSRIP 44
P EMS + V+PARA+ RC+G + E + SR RW R A CR
Sbjct: 37 PEEMSTRRKVRPARATVFRRCSGEE----EVMPGMRAASWSRGRWWRRRPA-CRQGDGGD 91
Query: 43 W 41
W
Sbjct: 92 W 92
>12_02_0634 + 21416205-21416954
Length = 249
Score = 32.3 bits (70), Expect = 0.48
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = -1
Query: 223 PTEMSDGKSVQPARASARNRCTGYDSTGAETIGSTLKTEASRCRWTCRADA 71
P EMS + V+PARA+ RC+G + E I SR RW R A
Sbjct: 69 PEEMSTRRKVRPARATVFRRCSGEE----EVIPGMRAASWSRGRWWRRRPA 115
>12_02_0828 -
23502276-23503472,23503568-23504002,23504097-23504213,
23505330-23505396,23505685-23505725,23506161-23506237,
23506699-23506945
Length = 726
Score = 31.5 bits (68), Expect = 0.84
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Frame = +2
Query: 476 HHSTPSTHIHTANRSRTVSAMTLTLLSFWC------PYAASGIASTIFPSITSQPRSSLD 637
HH+ P+T + + T + + +L+S WC P S + P+ +S R+++D
Sbjct: 343 HHTCPTTQQKMSTSALTPNYVLRSLISQWCETNGMEPPKRSTQPNKPTPACSSSERANID 402
Query: 638 AATSRACT 661
A S+ C+
Sbjct: 403 ALLSKLCS 410
>06_03_0147 + 17236158-17236808
Length = 216
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +3
Query: 405 SNSRRHCGFDPPGSLCGAARQVLITTRHHL 494
S+ +RH G PG L A R L+T HHL
Sbjct: 43 SHRQRHGGMPSPGDLAAALRGRLLTEDHHL 72
>03_02_0740 -
10836752-10837052,10837756-10837814,10837901-10838476,
10839965-10841686,10841776-10842173,10842264-10842318,
10842989-10843048,10843444-10843540,10844885-10844955,
10845029-10845109,10846054-10846124,10847951-10848119,
10848521-10848683,10848752-10848942,10849037-10849168
Length = 1381
Score = 29.9 bits (64), Expect = 2.6
Identities = 23/94 (24%), Positives = 34/94 (36%)
Frame = -1
Query: 412 EFDGSHLRKSWLLRSARSHRRQRWPVLGGVGKRFXXXXXXXXXXXXXXXPRDAAHQGTSR 233
E DG +L S L RS R ++ V+ G+R P + R
Sbjct: 474 EIDGDNLTDSALRRSRRKKKKSDGGVVTSSGRRVKKRNFDERDVPQVSRPHKSRKSRNDR 533
Query: 232 VELPTEMSDGKSVQPARASARNRCTGYDSTGAET 131
+ K ++P R +ARN + GA T
Sbjct: 534 SSKRKKSPKSKGLRPQRRAARNALSFLSKIGAST 567
>09_02_0204 - 5768596-5768793,5769857-5770006,5770407-5770583
Length = 174
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = -2
Query: 318 SDSVQLTEDHGWADPDPHHVMRHIRVRHESS--YRPRCRTVNQFSLREPRHV 169
+D + + HGW + + +RH R H S ++ R R V Q S R R +
Sbjct: 93 TDDLSHSTGHGWTTREKENSIRHYRRLHVSMVLHQDRLRRVRQMSTRLRRRL 144
>04_04_1633 +
34928139-34928511,34928700-34928774,34929385-34929483,
34929736-34929908,34929990-34930066,34930182-34930301,
34930385-34930472,34930610-34930716,34930814-34930871
Length = 389
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +2
Query: 287 PWSSVSWTESLTDAA-QHWPSLP 352
PW VSW ES + QH+ SLP
Sbjct: 17 PWDDVSWAESTSSTVLQHYNSLP 39
>03_05_0257 +
22439915-22440275,22440280-22440627,22440962-22441015,
22441390-22441763
Length = 378
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -1
Query: 466 WRAAPQSEPGGSKPQCRREFDGSHLRKSWLLRS 368
WR P P P+ RRE DG R+ W RS
Sbjct: 11 WRPVPHEAPPLPLPRLRRE-DGQEKRRRWPFRS 42
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +2
Query: 269 GSGSAHPWSSVSWTESLTDAAQHWPSLPSMTS 364
G G+A WSS S + T SLPSMTS
Sbjct: 264 GGGAAEAWSSASASSPPTTTTASRRSLPSMTS 295
>08_02_0463 + 17450935-17451180
Length = 81
Score = 29.1 bits (62), Expect = 4.5
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -2
Query: 396 IFESLGCFGAQEVIDGRDGQCWAASVSDSVQLTEDHG-WADPDPHHVMRHIR 244
+F SL + +ID +DG AAS V EDHG WA P V ++
Sbjct: 6 LFLSLALSLSLSLIDLKDGWQTAASPPRRVDRKEDHGHWAAPSEDAVTNDVQ 57
>06_03_1195 + 28311450-28312294,28312418-28312966,28314319-28314499
Length = 524
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -2
Query: 285 WADPDPHHVMRHIRVRHESSYRPRCRTVNQFSLREPRHVIDV 160
W PDP VMR R+ R + ++EPRHV+ V
Sbjct: 164 WPHPDPVEVMRAHRIMERVQEEQR----RWYGVKEPRHVLVV 201
>03_05_0576 + 25765137-25766420
Length = 427
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +2
Query: 647 SRACTTPVKKGFFKP*ATLQGAQHQG*REPALVLPEKKARGRPSGPP 787
+RA PV+ GF A L H ++P+ +K RG P PP
Sbjct: 23 ARAGPLPVQTGFPTSLADLVVKNHGRLKKPSASASRRKKRGGPEAPP 69
>02_01_0390 -
2824585-2825307,2828206-2828460,2829006-2829107,
2829386-2829598,2829688-2829897
Length = 500
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = +1
Query: 394 DETRRIRADTAALIHRARSVVPRAKSLSPLDTIYSYSYGEPIPYRFSNDA 543
DE AD ++ ARS +P+ T Y YGE P R + A
Sbjct: 352 DEAAPAAADAGEVLEFARSQADYILGTNPMATSYLVGYGEAYPRRVHHRA 401
>12_01_0598 + 4890006-4890290,4890901-4890987
Length = 123
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -1
Query: 508 RMNMSRWCRVVIRTWR-AAPQSEPGGSKPQCRREFDGSHLR 389
R+++ V+ +WR A + PGGS+P E G+ R
Sbjct: 47 RLDVDERMGTVLASWRKTAGRGRPGGSRPAAEAEIQGADPR 87
>07_01_0860 - 7142913-7144895
Length = 660
Score = 28.3 bits (60), Expect = 7.8
Identities = 22/77 (28%), Positives = 31/77 (40%)
Frame = +2
Query: 446 ALWCRAPSPYHHSTPSTHIHTANRSRTVSAMTLTLLSFWCPYAASGIASTIFPSITSQPR 625
AL CR PY H P+ A ++ T AS +ST P + S P
Sbjct: 583 ALACRCVRPYKHERPAMGEVLAELKAMLADYT-ARGGGADRSEASTSSSTATPDLASLPS 641
Query: 626 SSLDAATSRACTTPVKK 676
+S A + A TP ++
Sbjct: 642 TSSSVANTEAMATPPRR 658
>01_06_0187 -
27296834-27296980,27297567-27297731,27297820-27297918,
27299276-27299616,27299824-27300643
Length = 523
Score = 28.3 bits (60), Expect = 7.8
Identities = 18/76 (23%), Positives = 27/76 (35%)
Frame = +2
Query: 278 SAHPWSSVSWTESLTDAAQHWPSLPSMTSCAPKQPRLSKMRPVEFAPTLRL*STGLALWC 457
+++ W S S + D W + M + + R V + R G + C
Sbjct: 244 TSNTWISQS-ANGIADGIPQWEYVNGMNNAPGRFSRSGMTETVN--GSFREYQNGPSTLC 300
Query: 458 RAPSPYHHSTPSTHIH 505
R P PY H H H
Sbjct: 301 RGPLPYFHQHAGMHAH 316
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,178,101
Number of Sequences: 37544
Number of extensions: 524278
Number of successful extensions: 1650
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1649
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -