Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31159
(823 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20360| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_9853| Best HMM Match : Lipase_3 (HMM E-Value=0.00075) 31 1.5
SB_19754| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.6
SB_49513| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-19) 30 2.6
SB_20777| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_41787| Best HMM Match : Frizzled (HMM E-Value=0) 29 4.6
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.0
SB_21898| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.0
SB_3742| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_44872| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_4269| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
>SB_20360| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 414
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +2
Query: 443 LALWCRAPSPYHHSTPSTHIHTANRSRTVSAMTLTLLSFWC--PYAA 577
LA+W +A +++P + N TV+ +TLLSF C PYAA
Sbjct: 171 LAIWIKAK----YASPFANNRPVNNKLTVTLFLITLLSFLCYLPYAA 213
>SB_9853| Best HMM Match : Lipase_3 (HMM E-Value=0.00075)
Length = 593
Score = 30.7 bits (66), Expect = 1.5
Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Frame = +2
Query: 473 YHHSTPSTHIHT-ANRSRTVSAMTLTLLSFWCPYAASGIASTIFPSITSQPRSSLDAATS 649
Y+H T S ++H A R + W A ST+FP I PR L A S
Sbjct: 389 YYHVTDSNNVHVIAIRGANTPDELIHYAKIWNEIAVIQSLSTLFPIIHQVPRDYLSAYVS 448
>SB_19754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 315
Score = 29.9 bits (64), Expect = 2.6
Identities = 22/64 (34%), Positives = 30/64 (46%)
Frame = +1
Query: 298 RELDRIAYRRRPALAISAVDDFLRSEATKTFEDETRRIRADTAALIHRARSVVPRAKSLS 477
+ ++R RRP+L V F + + EDE +RA L HR RS K+LS
Sbjct: 90 KRMERKKKGRRPSLFRRFVGAFRNNPSNSEAEDEESELRAPPDYLSHRRRS-----KTLS 144
Query: 478 PLDT 489
L T
Sbjct: 145 SLPT 148
>SB_49513| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-19)
Length = 975
Score = 29.9 bits (64), Expect = 2.6
Identities = 25/77 (32%), Positives = 34/77 (44%)
Frame = +2
Query: 284 HPWSSVSWTESLTDAAQHWPSLPSMTSCAPKQPRLSKMRPVEFAPTLRL*STGLALWCRA 463
H SS + T A QH+ + S PR + + E A T+ L S+G L+CRA
Sbjct: 10 HELSSKKYFRFFTVALQHYGHISS--------PRFAVVTSEEVAKTIGLHSSGNVLFCRA 61
Query: 464 PSPYHHSTPSTHIHTAN 514
P PS I + N
Sbjct: 62 FKPPLVYHPSKGITSCN 78
>SB_20777| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 506
Score = 29.5 bits (63), Expect = 3.4
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = -2
Query: 444 SPVDQSRSVGANSTGLIFESLGCFGAQEVIDGRDGQCWAASVSDSVQLTED 292
S D +GAN T + S C G Q I+G D A V+DS + +D
Sbjct: 194 SEEDNGSLLGAN-TEICHSSCHCQGCQSQIEGDDTPVAAREVADSCETIQD 243
>SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 791
Score = 29.1 bits (62), Expect = 4.6
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Frame = -2
Query: 444 SPVDQSRSVGANSTGLIFESLGCFGAQEVIDGRDG--QCWAASVSDSVQLTEDHGWADPD 271
SP Q+ ++G+ S + E++ G DGRD + W DS + +E W P
Sbjct: 581 SPPRQAEAIGS-SRDVGKETVRDGGRDSGRDGRDTGRESWRDGARDSGRDSERKRWPRPP 639
Query: 270 PHHVMRHIRVRHESSYRPRCRTVNQ 196
RH SS P +TV +
Sbjct: 640 SPEPARHSHPDVTSSQSPALKTVKR 664
>SB_41787| Best HMM Match : Frizzled (HMM E-Value=0)
Length = 542
Score = 29.1 bits (62), Expect = 4.6
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 653 ACTTPVKKGFFKP*ATLQGAQHQG 724
AC P+KKGF P +QG +H+G
Sbjct: 269 ACNEPIKKGF--PKTLVQGTKHEG 290
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 28.7 bits (61), Expect = 6.0
Identities = 25/88 (28%), Positives = 34/88 (38%), Gaps = 7/88 (7%)
Frame = +1
Query: 472 LSPLDTIYSYSYGEP-------IPYRFSNDAYIAKLLVPLRSVRDSIHNLSFYHESAKKF 630
L LD + SY +P IP S IA ++ P R + IH KKF
Sbjct: 114 LKILDVLKKNSYEKPTPIQAQAIPVIMSGRDMIAIVMTPTRELAIQIHR------ECKKF 167
Query: 631 TGRGNLACVHYSGKEGLFQTVGHFTRSS 714
NL CV G G+ + + R +
Sbjct: 168 CKPNNLRCVCVYGGTGISEQIAELKRGA 195
>SB_21898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1084
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = -1
Query: 241 TSRVELPTEMSDGKSVQPARASARNRCTGYDSTGAETIGSTLKTEASRCR 92
T + + DGK +P + ++CT + TG ET+ + S CR
Sbjct: 195 TINTRVTCDRCDGKKAEPG--TTHSKCTTCNGTGQETVNTGFFYMKSTCR 242
>SB_3742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1494
Score = 28.3 bits (60), Expect = 8.0
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 166 RCTGYDSTGAETIGSTLKTEASRCRWTCR 80
RCT +T TI +T T S R+TCR
Sbjct: 794 RCTTISATRCTTISATRCTTISTTRYTCR 822
>SB_44872| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 908
Score = 28.3 bits (60), Expect = 8.0
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +1
Query: 346 SAVDDFLRSEATKTFEDETRRIRADTAALIHRARSVVPRAKSLSPLDTIYSYSYGEP 516
+ +D FL++ A + ADTAA + A V +K + L T+ S ++ P
Sbjct: 661 TVLDSFLKASAAGGLGSVKAEVLADTAAALASANVQVVSSKVIGRLHTLISKTFISP 717
>SB_4269| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 160
Score = 28.3 bits (60), Expect = 8.0
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = -2
Query: 321 VSDSVQLTEDHGWADPDPHHVMRHIRVRHESSYRPRCRTVNQFSL---REPRHVIDVRD 154
V D + D + D HH ++HI RH Y R++N+ SL EP H D+ D
Sbjct: 40 VDDEFREQHDKVYEDDSKHHRLKHI-FRHNVRY---IRSMNRRSLPYKLEPNHFGDLTD 94
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,705,603
Number of Sequences: 59808
Number of extensions: 553017
Number of successful extensions: 1557
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1555
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2299585728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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