Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31159
         (823 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039038-8|AAM81097.1|  874|Caenorhabditis elegans Hypothetical ...    33   0.25 
AF039038-7|AAM81098.1|  942|Caenorhabditis elegans Hypothetical ...    33   0.25 
Z81528-1|CAB04282.1|  345|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z78062-4|CAB01498.2|  341|Caenorhabditis elegans Hypothetical pr...    29   4.0  
U40942-3|AAU05564.1|  487|Caenorhabditis elegans Hypothetical pr...    29   4.0  
X98600-1|CAA67197.1|  511|Caenorhabditis elegans alpha nicotinic...    29   5.3  
X98599-1|CAA67196.1|  511|Caenorhabditis elegans alpha nicotinic...    29   5.3  
U88175-2|AAB42282.2|  511|Caenorhabditis elegans Uncoordinated p...    29   5.3  
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    29   5.3  
AF098993-5|AAC67468.1|  325|Caenorhabditis elegans Hypothetical ...    29   5.3  
Z81125-3|CAB03384.1|  790|Caenorhabditis elegans Hypothetical pr...    28   9.3  

>AF039038-8|AAM81097.1|  874|Caenorhabditis elegans Hypothetical
           protein K06A5.8a protein.
          Length = 874

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +3

Query: 321 PTPPSTGHLCRR*LLA-LRSNQDFRR*DPSNSRRHCGFDPPGSLCG 455
           PTP    HLC    L  L  ++DF+  +PS++R  C F+    LCG
Sbjct: 143 PTPEDYRHLCALLTLPKLSDHEDFKNWNPSSARVEC-FNKVNQLCG 187


>AF039038-7|AAM81098.1|  942|Caenorhabditis elegans Hypothetical
           protein K06A5.8b protein.
          Length = 942

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +3

Query: 321 PTPPSTGHLCRR*LLA-LRSNQDFRR*DPSNSRRHCGFDPPGSLCG 455
           PTP    HLC    L  L  ++DF+  +PS++R  C F+    LCG
Sbjct: 143 PTPEDYRHLCALLTLPKLSDHEDFKNWNPSSARVEC-FNKVNQLCG 187


>Z81528-1|CAB04282.1|  345|Caenorhabditis elegans Hypothetical
           protein F35E2.1 protein.
          Length = 345

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
 Frame = +1

Query: 358 DFLRSEATKTFEDETRRIRADTAALIHRA--RSVVPRAKSLSPLDTIYSYSYGEPIPYRF 531
           +F+     K FE+E + I++    L      +SV+P   SL  L   + + +G P+P  F
Sbjct: 215 NFVILRFVKHFENENKNIQSKIIQLTQSLLIQSVIPVIVSLPLLLLSFEFYFGIPMPSSF 274

Query: 532 SNDAY----IAKLLVPLRSV 579
            +  Y    +   L+PL S+
Sbjct: 275 GSTWYALTFLGPFLMPLSSI 294


>Z78062-4|CAB01498.2|  341|Caenorhabditis elegans Hypothetical
           protein F16D3.6 protein.
          Length = 341

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
 Frame = +1

Query: 358 DFLRSEATKTFED-ETRRIRADTAALIHRARSVVPRAKSLSPLDTIYSYSYGEPIPYRFS 534
           +F+     K FE+ +++RI+   + LI   +SV+P   SL  L   + + +G P+P  F 
Sbjct: 215 NFVILRFVKHFENIQSKRIQLTQSLLI---QSVIPVIVSLPLLLLSFEFYFGIPMPSSFG 271

Query: 535 NDAY----IAKLLVPLRSV 579
           +  Y    +   L+PL S+
Sbjct: 272 STWYALTFLGPFLMPLSSI 290


>U40942-3|AAU05564.1|  487|Caenorhabditis elegans Hypothetical
           protein K02E10.4b protein.
          Length = 487

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
 Frame = +2

Query: 467 SPYHHSTPSTHIHTANRSRTVSAMTLTLLSFWCPYAASGIASTIFPSITS--QPRSSLDA 640
           +PY+HS PST       +  VS   L LL ++    A    +   P + S  +P   L  
Sbjct: 56  TPYYHSNPSTTFFMIPTTTFVSCYFLILLVYFASAQAPTCPNGQLPKLDSSLRPLQCLPG 115

Query: 641 ATSR 652
           +TS+
Sbjct: 116 STSQ 119


>X98600-1|CAA67197.1|  511|Caenorhabditis elegans alpha nicotinic
           acetylcholine receptorsubunit protein.
          Length = 511

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
 Frame = +1

Query: 295 LRELDRIAYRRRPALAISAVDDFLRSEATKTFEDETRRIRADTAALIH--RARSVVPRAK 468
           L+ L ++ + RRP      +DD+      + F+D+ +      A  +H  R  +V    +
Sbjct: 363 LKWLPKLLFMRRP------IDDY-----EEKFDDKKKPKDGKIALSVHAHRVSNVGNNIR 411

Query: 469 SLSPLDTIYSYSYGEPIPYRFSNDAYIAKLL 561
           + +  DTI    Y  P+   F N  +IA+LL
Sbjct: 412 NATIDDTIQKMYYSPPVVKAFENICFIAELL 442


>X98599-1|CAA67196.1|  511|Caenorhabditis elegans alpha nicotinic
           acetylcholine receptorsubunit protein.
          Length = 511

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
 Frame = +1

Query: 295 LRELDRIAYRRRPALAISAVDDFLRSEATKTFEDETRRIRADTAALIH--RARSVVPRAK 468
           L+ L ++ + RRP      +DD+      + F+D+ +      A  +H  R  +V    +
Sbjct: 363 LKWLPKLLFMRRP------IDDY-----EEKFDDKKKPKDGKIALSVHAHRVSNVGNNIR 411

Query: 469 SLSPLDTIYSYSYGEPIPYRFSNDAYIAKLL 561
           + +  DTI    Y  P+   F N  +IA+LL
Sbjct: 412 NATIDDTIQKMYYSPPVVKAFENICFIAELL 442


>U88175-2|AAB42282.2|  511|Caenorhabditis elegans Uncoordinated
           protein 38 protein.
          Length = 511

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
 Frame = +1

Query: 295 LRELDRIAYRRRPALAISAVDDFLRSEATKTFEDETRRIRADTAALIH--RARSVVPRAK 468
           L+ L ++ + RRP      +DD+      + F+D+ +      A  +H  R  +V    +
Sbjct: 363 LKWLPKLLFMRRP------IDDY-----EEKFDDKKKPKDGKIALSVHAHRVSNVGNNIR 411

Query: 469 SLSPLDTIYSYSYGEPIPYRFSNDAYIAKLL 561
           + +  DTI    Y  P+   F N  +IA+LL
Sbjct: 412 NATIDDTIQKMYYSPPVVKAFENICFIAELL 442


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
            K06A9.1b protein.
          Length = 2232

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 19/71 (26%), Positives = 31/71 (43%)
 Frame = +2

Query: 344  SLPSMTSCAPKQPRLSKMRPVEFAPTLRL*STGLALWCRAPSPYHHSTPSTHIHTANRSR 523
            ++ S +   P  PR      +  +P+    ST  +L   +PSP  HS  S+   T +   
Sbjct: 1957 TIGSTSGTNPSSPRSLSQITITPSPSQSTESTQTSLPSSSPSPSTHSVSSSEGTTMSSGA 2016

Query: 524  TVSAMTLTLLS 556
            T S   ++ LS
Sbjct: 2017 TTSGDKMSFLS 2027


>AF098993-5|AAC67468.1|  325|Caenorhabditis elegans Hypothetical
           protein T10B11.6 protein.
          Length = 325

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -2

Query: 288 GWADPDPHHVMRHIRVRHESSYR 220
           GWA  +P H+ ++I+V ++  YR
Sbjct: 75  GWAGANPKHIDKYIKVYNDEGYR 97


>Z81125-3|CAB03384.1|  790|Caenorhabditis elegans Hypothetical
           protein T22A3.5 protein.
          Length = 790

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 680 SPSLPE*CTHARLPRPVNFLADS**KERLW 591
           SP+L + CT   +P+P N L D+  +   W
Sbjct: 508 SPNLVQMCTQCAIPKPYNLLRDAVSRSLRW 537


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,281,351
Number of Sequences: 27780
Number of extensions: 391950
Number of successful extensions: 1046
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)