Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31159
         (823 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g60970.1 68416.m06823 ABC transporter family protein ABC tran...    31   0.92 
At3g60160.1 68416.m06717 ABC transporter family protein similar ...    29   2.8  
At5g02040.2 68418.m00125 prenylated rab acceptor (PRA1) family p...    29   4.9  
At5g02040.1 68418.m00124 prenylated rab acceptor (PRA1) family p...    29   4.9  
At3g56160.1 68416.m06242 expressed protein                             29   4.9  
At1g28060.1 68414.m03435 small nuclear ribonucleoprotein family ...    28   8.6  

>At3g60970.1 68416.m06823 ABC transporter family protein ABC
           transporter-like proteins
          Length = 1037

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +2

Query: 458 RAPSPYHHSTPSTHI-HTANRSRTVSAMTLTLLSFWCPYAASGIASTIF 601
           RAP  Y  STP+  I + A+  ++V  + + +   WC ++   I  TIF
Sbjct: 566 RAPMSYFDSTPTGRILNRASTDQSVLDLEMAVKLGWCAFSIIQIVGTIF 614


>At3g60160.1 68416.m06717 ABC transporter family protein similar to
            ATP-binding cassette transporter MRP8 GI:18031899 from
            [Arabidopsis thaliana]
          Length = 1490

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +2

Query: 458  RAPSPYHHSTPSTHI-HTANRSRTVSAMTLTLLSFWCPYAASGIASTIF 601
            RAP  +  STP+  I + A+  ++V  + + +   WC ++   I  TIF
Sbjct: 1019 RAPMSFFDSTPTGRILNRASTDQSVLDLEMAVKLGWCAFSIIQIVGTIF 1067


>At5g02040.2 68418.m00125 prenylated rab acceptor (PRA1) family
           protein contains Pfam PF03208: PRA1 family protein
          Length = 209

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = +2

Query: 419 TLRL*STGLALWCRAP-SPYHHSTPSTH--IHTANRSRTVSAMTLTLLSFWCPYAASGI 586
           T+R  S  LA   R P +P     PS+   IH   + R V  +T +L+SF   Y +SG+
Sbjct: 105 TVRRFSPQLAAKMRPPLTPVTRGRPSSKRAIHVCGQPRWVFVLTCSLVSFALWYISSGL 163


>At5g02040.1 68418.m00124 prenylated rab acceptor (PRA1) family
           protein contains Pfam PF03208: PRA1 family protein
          Length = 209

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = +2

Query: 419 TLRL*STGLALWCRAP-SPYHHSTPSTH--IHTANRSRTVSAMTLTLLSFWCPYAASGI 586
           T+R  S  LA   R P +P     PS+   IH   + R V  +T +L+SF   Y +SG+
Sbjct: 105 TVRRFSPQLAAKMRPPLTPVTRGRPSSKRAIHVCGQPRWVFVLTCSLVSFALWYISSGL 163


>At3g56160.1 68416.m06242 expressed protein 
          Length = 436

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 8/108 (7%)
 Frame = +2

Query: 308 TESLTDAAQHWP-SLPSMTSCAPKQPRLSKM-RPVEFAPTLRL*STGLALWCRAPSPYHH 481
           TE++  A + WP  L  + S     P  S++   V+  P  R   TGL ++C  P+    
Sbjct: 154 TEAIGAAVKGWPLGLFGLISILLLTPSFSRLIMLVQLQP--RELVTGLGIFCCMPTTLSS 211

Query: 482 STPSTHIHTANRSR----TVSAMTLTLLS--FWCPYAASGIASTIFPS 607
               TH+   N +     TV++  L +L+  FW     +G     FP+
Sbjct: 212 GVALTHLAGGNAALALAVTVASNLLGILTIPFWVSRYIAGGVGVSFPT 259


>At1g28060.1 68414.m03435 small nuclear ribonucleoprotein family
           protein / snRNP family protein contains similarity to
           U4/U6 small nuclear ribonucleoprotein hPrp3 [Homo
           sapiens] gi|2708307|gb|AAC51926
          Length = 786

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +2

Query: 269 GSGSAHPWSSVSWTESLTDAAQHWPSLPSMTSCAPKQPRLSKMRPV 406
           GSG+ +P S V      T  A  + S+PS  S AP Q  L+K+  +
Sbjct: 147 GSGATNPTSGV------TMGASTYSSIPSEASAAPSQTLLTKVSSI 186


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,510,560
Number of Sequences: 28952
Number of extensions: 368241
Number of successful extensions: 965
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1882599200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)