Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31156
(330 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27D7.06 |||electron transfer flavoprotein alpha subunit|Schi... 43 1e-05
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p... 27 0.73
SPAC1687.23c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 1.7
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 25 3.0
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p... 25 3.0
SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr... 25 3.0
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 3.9
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 24 5.2
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos... 24 5.2
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 24 5.2
SPAC4F10.18 |||WD repeat protein, human NUP37 family|Schizosacch... 24 6.8
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa... 24 6.8
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 23 9.0
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz... 23 9.0
SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c... 23 9.0
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 23 9.0
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 23 9.0
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c... 23 9.0
SPCC126.01c ||SPCC576.18c|conserved fungal protein|Schizosacchar... 23 9.0
SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyce... 23 9.0
>SPAC27D7.06 |||electron transfer flavoprotein alpha
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 341
Score = 43.2 bits (97), Expect = 1e-05
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +1
Query: 160 STLVLAEHNNEVLSPATQNTLNAAKKIGGDVSMLVAGTKCGPAAESIAKA-NGISKVL 330
S L L EH LSPA+ + + AAK+ GGDV V G ++ +AK+ N + KV+
Sbjct: 29 SVLTLLEHQGGNLSPASLSAVEAAKRTGGDVFGFVIGKDSSQISQKVAKSVNDLKKVI 86
>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 832
Score = 27.1 bits (57), Expect = 0.73
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -3
Query: 244 LQFSWQHSMYFGLLEIV-PHCCARRALKYFANDAAVQYKNKCLLL 113
++ SWQ++ E+ C R ALK FA+ + V KNK LL
Sbjct: 281 VKHSWQNTEAENHCELNNDSSCLREALKKFASQSIVLLKNKKKLL 325
>SPAC1687.23c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 104
Score = 25.8 bits (54), Expect = 1.7
Identities = 10/39 (25%), Positives = 23/39 (58%)
Frame = -3
Query: 298 WILQQVHIWFQPQALRHPLQFSWQHSMYFGLLEIVPHCC 182
WIL++ +I+F+ ++ +F + +++ LL +CC
Sbjct: 2 WILEKKNIFFKIIHIKSSRKFDFSNAIRIVLLPFSSNCC 40
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 25.0 bits (52), Expect = 3.0
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 230 PRKLEGMSQCLWLEPNVDLLQNPLLRQMVYLK 325
P+K E +C L +D+LQN + + + LK
Sbjct: 435 PKKAEATKRCDQLNREIDILQNHVEKLKMSLK 466
>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 752
Score = 25.0 bits (52), Expect = 3.0
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -2
Query: 302 AMDSAAGPHLVPATSIETSPPIFLAAFNVFWVAGDSTS 189
++D P L+P IE +PPI + ++ +A + +S
Sbjct: 581 SLDRFVLPKLLPGKPIEFTPPISVEPTSIKTIAAEESS 618
>SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr
1|||Manual
Length = 581
Score = 25.0 bits (52), Expect = 3.0
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = -3
Query: 298 WILQQVHIWFQPQALRHPLQF 236
W+L + IWF +RH F
Sbjct: 194 WLLSNIAIWFPVHQIRHLFTF 214
>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 773
Score = 24.6 bits (51), Expect = 3.9
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = +3
Query: 267 WNQMWTCCRIHC*GKWYI 320
W+ +WTC + G+W I
Sbjct: 86 WHYIWTCTSLKSNGEWKI 103
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 24.2 bits (50), Expect = 5.2
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -3
Query: 190 HCCARRALKYFANDAAVQYKNKCL 119
H A ALK AN A+ N+C+
Sbjct: 833 HLAAEEALKIGANQEALDLYNRCI 856
Score = 23.8 bits (49), Expect = 6.8
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 142 QLRRLQSTLVLAEHNNEVLSPATQNTLNAAKKIGG 246
+L ++S L++HN ++ SPA Q + A + G
Sbjct: 1175 KLDLIKSKSFLSDHNIQLSSPAAQESAKLAFSLHG 1209
>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 449
Score = 24.2 bits (50), Expect = 5.2
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +2
Query: 95 YQNVCTQ*QAFIFVLHSCVVCK 160
YQ +CTQ + FV C CK
Sbjct: 21 YQKICTQIFSCHFVPRRCSTCK 42
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 24.2 bits (50), Expect = 5.2
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +1
Query: 10 LQEFGTRLDLSLINYLINKNSIS*TKSCLSKCLHPIAG 123
L+ + D LI+YL+ NS++ L C++ + G
Sbjct: 644 LEHLDSSQDDVLIDYLVKSNSVTHRALLLKLCVNKLLG 681
>SPAC4F10.18 |||WD repeat protein, human NUP37
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 391
Score = 23.8 bits (49), Expect = 6.8
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = +1
Query: 49 NYLINKNSIS*TKSCLSKCLHPIAGIYFCTA 141
N L N IS S L C HP YF TA
Sbjct: 302 NLLPNVQGISLFPSLLGACPHPRYMDYFATA 332
>SPBC418.02 |||NatA N-acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 23.8 bits (49), Expect = 6.8
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = -2
Query: 251 TSPPIFLAAFNVFWVAGDSTSLLCSASTKV 162
T P +FLA +F G+ LCS V
Sbjct: 397 TYPELFLAKAKIFLCMGEIEEALCSFKRSV 426
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 23.4 bits (48), Expect = 9.0
Identities = 12/50 (24%), Positives = 22/50 (44%)
Frame = +1
Query: 163 TLVLAEHNNEVLSPATQNTLNAAKKIGGDVSMLVAGTKCGPAAESIAKAN 312
TLV + +EV++P T N N++ S + + +K+N
Sbjct: 186 TLVSTSYVSEVVTPTTTNNWNSSSSFTSSTSSTPISSSYSSSGTLPSKSN 235
>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 23.4 bits (48), Expect = 9.0
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 226 HSMYFGLLEIVPHCCARRALKYFAND 149
H +Y G+L + +RALK+ +ND
Sbjct: 62 HRLYRGILPPILMEAPKRALKFASND 87
>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 581
Score = 23.4 bits (48), Expect = 9.0
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = -3
Query: 298 WILQQVHIWFQPQALRH 248
W++ V IWF +RH
Sbjct: 192 WLISNVAIWFPVYQIRH 208
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 23.4 bits (48), Expect = 9.0
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -2
Query: 290 AAGPHLVPATSIETSPPIFLAAFNVF 213
A GP P TS+ T P ++ +VF
Sbjct: 548 ARGPVRRPPTSVNTKPSFSVSGIDVF 573
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 23.4 bits (48), Expect = 9.0
Identities = 8/23 (34%), Positives = 10/23 (43%)
Frame = +3
Query: 231 QENWRGCLNACGWNQMWTCCRIH 299
Q W LN W+ +W IH
Sbjct: 2208 QNFWLSSLNGRSWSYLWDIGNIH 2230
>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1111
Score = 23.4 bits (48), Expect = 9.0
Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Frame = -3
Query: 256 LRHPLQFSWQHSMYFGL---LEIVPHCCARRALKYFANDAAVQYKNKCLLLGANILISKI 86
L Q WQ F + LE VP R+ F + Y N L LG +SK+
Sbjct: 32 LEKKYQQKWQEEKAFEVDAPLEDVPIDELRKKYPKFFGNMPYPYMNGALHLGHAFTLSKV 91
Query: 85 LF 80
F
Sbjct: 92 EF 93
>SPCC126.01c ||SPCC576.18c|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 369
Score = 23.4 bits (48), Expect = 9.0
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -2
Query: 221 NVFWVAGDSTSLLCSASTKV 162
++FW G +S+ C TKV
Sbjct: 189 DIFWTCGSESSIRCWHITKV 208
>SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 170
Score = 23.4 bits (48), Expect = 9.0
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 136 YKNKCLLLGANILISKILF 80
Y+ K LL+G+ +IS ILF
Sbjct: 129 YEGKSLLMGSANIISNILF 147
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,406,192
Number of Sequences: 5004
Number of extensions: 26217
Number of successful extensions: 91
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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