Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31156
(330 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0993 - 13058785-13059025,13059188-13059264,13062157-130623... 38 0.003
03_06_0581 + 34886728-34886817,34886990-34887175,34887332-348875... 37 0.004
03_02_0187 - 6248226-6249226,6249296-6250148 30 0.51
12_01_0484 + 3840020-3840152,3840261-3840390,3840467-3841004 29 0.67
07_03_1621 + 28187846-28187915,28189214-28189293,28189485-281895... 28 2.0
05_07_0041 + 27261968-27262145,27262160-27262717,27262814-27263589 28 2.0
03_06_0538 + 34591897-34593703,34595436-34595506,34596328-34598775 27 3.6
01_06_1790 - 39888313-39888350,39888437-39888530,39888612-398888... 27 4.7
09_06_0060 + 20593519-20594667,20594898-20594927,20595237-20595326 26 6.2
06_02_0363 - 15172528-15173224,15174564-15174856 26 6.2
11_01_0179 - 1412391-1412863,1412947-1413412,1413504-1414551,141... 26 8.3
09_06_0061 + 20596360-20596618,20597039-20597158,20597329-205974... 26 8.3
09_04_0154 - 15180921-15181811,15181986-15182070,15182205-15182419 26 8.3
07_03_0843 - 21962223-21963815,21963957-21964607 26 8.3
02_01_0426 + 3113443-3114220,3119557-3119693,3119831-3120817 26 8.3
02_01_0010 - 72857-72877,73237-73419 26 8.3
>03_02_0993 -
13058785-13059025,13059188-13059264,13062157-13062351,
13062650-13062811,13062915-13063044,13063082-13063149,
13063244-13063291,13063383-13063448,13063739-13063818,
13064644-13064737
Length = 386
Score = 37.5 bits (83), Expect = 0.003
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = +1
Query: 175 AEHNNEVLSPATQNTLNAAKKIGGDVSMLVAGTKCGPAAES 297
+ +NN +L PA N ++ A+K+ GD+S++V G G A S
Sbjct: 169 SSYNNTLLRPAIANAVHKARKLYGDISIIVTGHSMGGALAS 209
>03_06_0581 +
34886728-34886817,34886990-34887175,34887332-34887543,
34888161-34888318,34888615-34888773,34888921-34888973,
34889265-34889405,34889788-34889823,34890542-34890776,
34891017-34891144
Length = 465
Score = 36.7 bits (81), Expect = 0.004
Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 6/68 (8%)
Frame = +1
Query: 145 LRRLQSTLVLAEHNNEVLSPATQNTLNAAKKIGGD---VSMLVAGTKCG--PAAESIAKA 309
L R STLV+AEH + P++ + L AA+ IG D VS+L+ G+ G AAE A +
Sbjct: 27 LPRPVSTLVVAEHEGGFVKPSSLSALAAAEAIGKDDNRVSLLLGGSGPGLHKAAEHAASS 86
Query: 310 NG-ISKVL 330
+ +S+VL
Sbjct: 87 HPLVSEVL 94
>03_02_0187 - 6248226-6249226,6249296-6250148
Length = 617
Score = 29.9 bits (64), Expect = 0.51
Identities = 18/79 (22%), Positives = 38/79 (48%)
Frame = -3
Query: 313 HLP*QWILQQVHIWFQPQALRHPLQFSWQHSMYFGLLEIVPHCCARRALKYFANDAAVQY 134
HLP + Q+V +W +P ++ P S F + ++ H R+A+ ++ +
Sbjct: 36 HLPPPLLAQKVQVWPKPTSISWPSAVYAPLSPSFSVRAVLSHPSLRQAVAFYTRLIRAE- 94
Query: 133 KNKCLLLGANILISKILFR 77
++ L+ AN +S++ R
Sbjct: 95 RHAPLVPPANYTLSRVPVR 113
>12_01_0484 + 3840020-3840152,3840261-3840390,3840467-3841004
Length = 266
Score = 29.5 bits (63), Expect = 0.67
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +1
Query: 196 LSPATQNTLNAAKKIGGDVSMLVAGTKCGPAAES 297
L P T LNAA + G + G+ C P A S
Sbjct: 121 LDPLTHRPLNAAAAVAGHHHLAAGGSSCSPDATS 154
>07_03_1621 +
28187846-28187915,28189214-28189293,28189485-28189550,
28189801-28189848,28189967-28190034,28190107-28190179,
28190284-28190445,28190620-28190814,28191114-28191190,
28191280-28191481
Length = 346
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +1
Query: 175 AEHNNEVLSPATQNTLNAAKKIGGDVSMLVAGTKCGPAAES 297
+ +NN +L A + ++ A++ GD++++V G G A S
Sbjct: 142 SSYNNTILRLAITSAVHKARQSYGDINVIVTGHSMGGAMAS 182
>05_07_0041 + 27261968-27262145,27262160-27262717,27262814-27263589
Length = 503
Score = 27.9 bits (59), Expect = 2.0
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -2
Query: 308 ALAMDSAAGPHLVPATSIETSPPIFLAAFNVFWVAGDSTSLLCSASTKVL 159
A + +AA P L A + T+P LAA + +T+ L +A+T V+
Sbjct: 60 AREVPAAAAPRLATAATCFTAPARLLAAATTAALIASTTACLLAATTGVI 109
>03_06_0538 + 34591897-34593703,34595436-34595506,34596328-34598775
Length = 1441
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = -1
Query: 312 ICLSNGFCSRSTFGSSHKH*DIPSNFLGSIQCILGCWR 199
+C N FC + G + FL + Q LGCWR
Sbjct: 945 VCGPNSFCHLTVTGETSCSCLPGFEFLSTNQSTLGCWR 982
>01_06_1790 -
39888313-39888350,39888437-39888530,39888612-39888836,
39888944-39889018,39889144-39889212,39889319-39889384,
39889492-39889713,39889794-39890681,39890973-39891053,
39892546-39892598,39893010-39893088,39893218-39893319
Length = 663
Score = 26.6 bits (56), Expect = 4.7
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 323 LDIPFALAMDSAAGPHLVPATSIETSPP 240
L++ + +MD+AAG HL PA S S P
Sbjct: 201 LNLNWDQSMDAAAGGHLDPALSSMVSSP 228
>09_06_0060 + 20593519-20594667,20594898-20594927,20595237-20595326
Length = 422
Score = 26.2 bits (55), Expect = 6.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 281 PHLVPATSIETSPPIFLAAFNVFWVAGDS 195
P L+ A + P +FL+ FN +V+G S
Sbjct: 82 PLLLSALRLRRQPHLFLSTFNSLFVSGSS 110
>06_02_0363 - 15172528-15173224,15174564-15174856
Length = 329
Score = 26.2 bits (55), Expect = 6.2
Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = -2
Query: 317 IPFA-LAMDSAAGPHLVPATSIETSP 243
+PFA LA DS A PH S TSP
Sbjct: 297 VPFADLATDSGASPHSSSGWSSPTSP 322
>11_01_0179 - 1412391-1412863,1412947-1413412,1413504-1414551,
1414639-1414725,1416244-1416411,1416785-1416958,
1417662-1417720,1418132-1420154,1420549-1420647,
1420998-1421796,1422101-1422120,1422446-1422513
Length = 1827
Score = 25.8 bits (54), Expect = 8.3
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 305 LAMDSAAGPHLVPATSIETSPPIF 234
L+ DS G H + +S+E S P F
Sbjct: 1736 LSSDSGTGTHFIDGSSVEDSDPQF 1759
>09_06_0061 +
20596360-20596618,20597039-20597158,20597329-20597462,
20597578-20597730,20597816-20597927,20598022-20598352,
20598524-20598737,20598842-20598931,20599669-20599924,
20600029-20600141,20600733-20600831,20600915-20600980,
20601018-20601167,20601278-20601368,20601710-20601749,
20603888-20605247,20605478-20605507,20605834-20605885,
20606264-20606397,20606513-20606665,20607089-20607202
Length = 1356
Score = 25.8 bits (54), Expect = 8.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 281 PHLVPATSIETSPPIFLAAFNVFWVAGDS 195
P L+ A + P +FL+ FN +V+G S
Sbjct: 895 PLLLSALRLRRQPHLFLSTFNSLFVSGPS 923
>09_04_0154 - 15180921-15181811,15181986-15182070,15182205-15182419
Length = 396
Score = 25.8 bits (54), Expect = 8.3
Identities = 7/15 (46%), Positives = 12/15 (80%), Gaps = 2/15 (13%)
Frame = +3
Query: 279 WTC--CRIHC*GKWY 317
W+C C++HC G+W+
Sbjct: 161 WSCSVCQVHCNGEWH 175
>07_03_0843 - 21962223-21963815,21963957-21964607
Length = 747
Score = 25.8 bits (54), Expect = 8.3
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 239 LEGMSQCLWLEPNVDLLQNPLLRQMVYL 322
L +S +WL P+ +Q P R +VYL
Sbjct: 538 LYAISPVMWLIPDEVYIQRPFTRYVVYL 565
>02_01_0426 + 3113443-3114220,3119557-3119693,3119831-3120817
Length = 633
Score = 25.8 bits (54), Expect = 8.3
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = -2
Query: 329 KTLDIPFALAMDSAAGPHLVPATSIETSPPI-FLAAFNVFWVAG 201
K D DSA P + T ET+P I F AF F+ G
Sbjct: 577 KLCDPTLTRTCDSAEAPPVSTLTGEETTPKIVFAIAFGAFFCLG 620
>02_01_0010 - 72857-72877,73237-73419
Length = 67
Score = 25.8 bits (54), Expect = 8.3
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Frame = +3
Query: 120 RHLFLYCTAASFAKYFSARRAQQ*GTISSNPKYIE----CCQENWR 245
+HLFL C F F+A + QQ + SS + CC W+
Sbjct: 9 QHLFLLCRLLGFCFAFTASQQQQSDSCSSAGVAVAHLAFCCLTVWK 54
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,368,424
Number of Sequences: 37544
Number of extensions: 174155
Number of successful extensions: 501
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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