Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31156
(330 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81130-12|CAB61027.1| 332|Caenorhabditis elegans Hypothetical p... 66 7e-12
Z79695-8|CAB01967.2| 332|Caenorhabditis elegans Hypothetical pr... 66 7e-12
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l... 27 3.2
Z49911-2|CAA90130.1| 681|Caenorhabditis elegans Hypothetical pr... 27 4.2
U56964-1|AAB54033.2| 555|Caenorhabditis elegans Twik family of ... 26 5.5
U41550-2|AAA83285.2| 301|Caenorhabditis elegans Hypothetical pr... 26 5.5
AF083645-1|AAC32856.1| 555|Caenorhabditis elegans potassium cha... 26 5.5
Z75952-4|CAB00094.2| 303|Caenorhabditis elegans Hypothetical pr... 26 7.3
U49830-7|AAM98046.1| 774|Caenorhabditis elegans Neuronal igcam ... 25 9.7
U49830-6|AAK31481.1| 964|Caenorhabditis elegans Neuronal igcam ... 25 9.7
U49830-5|AAK31482.1| 1227|Caenorhabditis elegans Neuronal igcam ... 25 9.7
U49830-4|AAU20850.1| 1196|Caenorhabditis elegans Neuronal igcam ... 25 9.7
U40798-6|AAA81476.1| 1003|Caenorhabditis elegans Temporarily ass... 25 9.7
U37548-4|AAA79200.2| 373|Caenorhabditis elegans Hypothetical pr... 25 9.7
AC199169-5|ABO33251.1| 314|Caenorhabditis elegans Hypothetical ... 25 9.7
>Z81130-12|CAB61027.1| 332|Caenorhabditis elegans Hypothetical
protein F27D4.1 protein.
Length = 332
Score = 65.7 bits (153), Expect = 7e-12
Identities = 30/60 (50%), Positives = 40/60 (66%)
Frame = +1
Query: 151 RLQSTLVLAEHNNEVLSPATQNTLNAAKKIGGDVSMLVAGTKCGPAAESIAKANGISKVL 330
RL STLV+AEH+ L+P T N + AA K+G +VS+LV G AE +AK NG+ +VL
Sbjct: 19 RLNSTLVVAEHDETKLAPITLNAITAASKLGNEVSVLVTGANATKVAEQVAKVNGVKRVL 78
>Z79695-8|CAB01967.2| 332|Caenorhabditis elegans Hypothetical
protein F27D4.1 protein.
Length = 332
Score = 65.7 bits (153), Expect = 7e-12
Identities = 30/60 (50%), Positives = 40/60 (66%)
Frame = +1
Query: 151 RLQSTLVLAEHNNEVLSPATQNTLNAAKKIGGDVSMLVAGTKCGPAAESIAKANGISKVL 330
RL STLV+AEH+ L+P T N + AA K+G +VS+LV G AE +AK NG+ +VL
Sbjct: 19 RLNSTLVVAEHDETKLAPITLNAITAASKLGNEVSVLVTGANATKVAEQVAKVNGVKRVL 78
>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
lipoprotein receptorrelated protein 2 protein.
Length = 2192
Score = 27.1 bits (57), Expect = 3.2
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -1
Query: 309 CLSNGFCSRSTFGSSHKH*DIPSNFLG 229
CL+ GFCS + S H PS F G
Sbjct: 1804 CLNGGFCSYANSNRSLPHCICPSGFTG 1830
>Z49911-2|CAA90130.1| 681|Caenorhabditis elegans Hypothetical
protein M28.2 protein.
Length = 681
Score = 26.6 bits (56), Expect = 4.2
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +1
Query: 184 NNEVLSPATQNTLNAAKKIGGDVSMLVAGTKCGPAAESIAKANGISKVL 330
+++ +T+ T N K+ GD+ L K GP + A AN + KV+
Sbjct: 239 DSDAFKRSTEVTYNKGVKLIGDLQTLQMSPKTGPDCRNTA-ANLLEKVI 286
>U56964-1|AAB54033.2| 555|Caenorhabditis elegans Twik family of
potassium channelsprotein 16 protein.
Length = 555
Score = 26.2 bits (55), Expect = 5.5
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = -2
Query: 320 DIPFALAMDSAA--GPHLVPATSIETSPPIFLAAFNVF 213
D PF MD+ A P +PA ++ PIF A N F
Sbjct: 382 DHPFIFKMDAPAPRSPLPLPAYELDIKKPIFQALSNEF 419
>U41550-2|AAA83285.2| 301|Caenorhabditis elegans Hypothetical
protein R04A9.3 protein.
Length = 301
Score = 26.2 bits (55), Expect = 5.5
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -2
Query: 272 VPATSIETSPPIFLAAFNVFWVAGDSTSLLCSASTKVLCKRRSCAVQK 129
VP+ + S I L+A +V V S L CS T ++ + + +QK
Sbjct: 57 VPSLDKQNSVSINLSAVDVSQVLYSSPQLCCSLPTSLILRLSAQGIQK 104
>AF083645-1|AAC32856.1| 555|Caenorhabditis elegans potassium
channel subunit n2P16 protein.
Length = 555
Score = 26.2 bits (55), Expect = 5.5
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = -2
Query: 320 DIPFALAMDSAA--GPHLVPATSIETSPPIFLAAFNVF 213
D PF MD+ A P +PA ++ PIF A N F
Sbjct: 382 DHPFIFKMDAPAPRSPLPLPAYELDIKKPIFQALSNEF 419
>Z75952-4|CAB00094.2| 303|Caenorhabditis elegans Hypothetical
protein F29D10.3 protein.
Length = 303
Score = 25.8 bits (54), Expect = 7.3
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +3
Query: 231 QENWRGCLNACGWNQMWTCCRIHC*G 308
QENW CL C W+ C +C G
Sbjct: 56 QENWDNCLVKCYWDD--DCLVSYCIG 79
>U49830-7|AAM98046.1| 774|Caenorhabditis elegans Neuronal igcam
protein 6, isoform c protein.
Length = 774
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1
Query: 94 LSKCLHPIAGIYFCTA 141
+ K LH AG++FCTA
Sbjct: 175 IEKVLHEDAGLFFCTA 190
>U49830-6|AAK31481.1| 964|Caenorhabditis elegans Neuronal igcam
protein 6, isoform a protein.
Length = 964
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1
Query: 94 LSKCLHPIAGIYFCTA 141
+ K LH AG++FCTA
Sbjct: 365 IEKVLHEDAGLFFCTA 380
>U49830-5|AAK31482.1| 1227|Caenorhabditis elegans Neuronal igcam
protein 6, isoform b protein.
Length = 1227
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1
Query: 94 LSKCLHPIAGIYFCTA 141
+ K LH AG++FCTA
Sbjct: 628 IEKVLHEDAGLFFCTA 643
>U49830-4|AAU20850.1| 1196|Caenorhabditis elegans Neuronal igcam
protein 6, isoform d protein.
Length = 1196
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1
Query: 94 LSKCLHPIAGIYFCTA 141
+ K LH AG++FCTA
Sbjct: 597 IEKVLHEDAGLFFCTA 612
>U40798-6|AAA81476.1| 1003|Caenorhabditis elegans Temporarily
assigned gene nameprotein 158 protein.
Length = 1003
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 94 LSKCLHPIAGIYFCTAQLRRLQSTLVLAE 180
++K ++P +G Y C R LQS+ VL E
Sbjct: 214 VTKTIYPDSGQYVCMYNDRLLQSSAVLNE 242
>U37548-4|AAA79200.2| 373|Caenorhabditis elegans Hypothetical
protein C54D2.1 protein.
Length = 373
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 265 AGTKCGPAAESIAKANGISKV 327
+GT+C P+A S A NG+ +V
Sbjct: 63 SGTQCLPSAASAAAVNGVYQV 83
>AC199169-5|ABO33251.1| 314|Caenorhabditis elegans Hypothetical
protein F38A1.11 protein.
Length = 314
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +3
Query: 234 ENWRGCLNACGWNQMWTCCRI 296
ENW CL C W+ W C I
Sbjct: 17 ENWENCLEKC-WD-TWNCVLI 35
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,988,765
Number of Sequences: 27780
Number of extensions: 155495
Number of successful extensions: 460
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 397381406
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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