Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31156
         (330 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    24   0.41 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   1.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   1.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   3.9  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    20   8.9  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    20   8.9  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    20   8.9  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 24.2 bits (50), Expect = 0.41
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = -2

Query: 275 LVPATSIETSPPIFLAAFNVFWVAGDSTSLLCSASTKVLC 156
           ++ AT +  +  + L    V W+   ST  + +AS  ++C
Sbjct: 254 ILHATYVIPAVTMMLLTLTVLWLDSRSTERMIAASVNLIC 293


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 1.7
 Identities = 8/20 (40%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = -1

Query: 234 LGSIQCILGCW-R*YLIVVL 178
           +G   C+L CW   Y I++L
Sbjct: 100 IGYATCVLSCWTNIYYIIIL 119


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 1.7
 Identities = 8/20 (40%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = -1

Query: 234 LGSIQCILGCW-R*YLIVVL 178
           +G   C+L CW   Y I++L
Sbjct: 153 IGYATCVLSCWTNIYYIIIL 172


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 217 TLNAAKKIGGDVSMLVAGTKCGPAAESIAKANGIS 321
           T+N    I    S +V+  +CGPAA+   K +  S
Sbjct: 155 TVNCTSSIAS--SGVVSAGECGPAADVDEKTDANS 187


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 71  VFPEQNLAYQN 103
           V PEQ+L YQ+
Sbjct: 656 VIPEQSLTYQD 666


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 154 NDAAVQYKNKCLL 116
           N+ A  Y N+CLL
Sbjct: 477 NNMAATYMNECLL 489


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = +2

Query: 140 HSCVVCKVL*CSPSTTMRY 196
           + CV+C+ + CS ++ M +
Sbjct: 36  YRCVICERVYCSRNSLMTH 54


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,892
Number of Sequences: 438
Number of extensions: 1753
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7342137
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)