Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31156
(330 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g50940.1 68414.m05727 electron transfer flavoprotein alpha su... 38 0.002
At4g37800.1 68417.m05349 xyloglucan:xyloglucosyl transferase, pu... 28 1.7
At5g24480.1 68418.m02885 hypothetical protein similar to unknown... 27 3.0
At1g08370.1 68414.m00926 hydroxyproline-rich glycoprotein family... 27 3.0
At5g57550.1 68418.m07190 xyloglucan:xyloglucosyl transferase / x... 27 4.0
At5g07570.1 68418.m00867 glycine/proline-rich protein contains s... 27 4.0
At4g30290.1 68417.m04305 xyloglucan:xyloglucosyl transferase, pu... 27 4.0
At5g65730.1 68418.m08272 xyloglucan:xyloglucosyl transferase, pu... 26 5.3
At4g30270.1 68417.m04303 MERI-5 protein (MERI-5) (MERI5B) / endo... 26 5.3
At5g05880.1 68418.m00647 UDP-glucoronosyl/UDP-glucosyl transfera... 26 7.0
At5g21960.1 68418.m02551 AP2 domain-containing transcription fac... 25 9.3
At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil... 25 9.3
>At1g50940.1 68414.m05727 electron transfer flavoprotein alpha
subunit family protein contains Pfam profile: PF00766
electron transfer flavoprotein, alpha subunit
Length = 363
Score = 37.5 bits (83), Expect = 0.002
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Frame = +1
Query: 145 LRRLQSTLVLAEHNNEVLSPATQNTLNAAKKIG--GDVSMLVAGT 273
L R STL+LAEH + + P T +T+ AA +G +S+L+AG+
Sbjct: 31 LSRCISTLILAEHESGTIKPQTVSTVVAANSLGESSSISLLLAGS 75
>At4g37800.1 68417.m05349 xyloglucan:xyloglucosyl transferase,
putative / xyloglucan endotransglycosylase, putative /
endo-xyloglucan transferase, putative similar to
N-terminal partial sequence of endo-xyloglucan
transferase GI:2244732 from [Gossypium hirsutum]
Length = 293
Score = 27.9 bits (59), Expect = 1.7
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -3
Query: 289 QQVHIWFQPQALRHPLQFSWQHSMYFGLLEIVP 191
Q+V++WF P H SW H ++ VP
Sbjct: 139 QRVNLWFDPSRDFHEYAISWNHLRIVFYVDNVP 171
>At5g24480.1 68418.m02885 hypothetical protein similar to unknown
protein (gb|AAD32930.1)
Length = 350
Score = 27.1 bits (57), Expect = 3.0
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Frame = +1
Query: 127 YFCTAQLRRLQSTLVLAEHNNEVLSPATQNTLNAAKKIGGDVSMLVAGTKC-GPAAES-- 297
Y CT+ L T L+ H LSP + T+ + L+ G C P S
Sbjct: 78 YVCTSSLMISVPTTSLSFHRRSYLSPQIRRTITVLCSTEALLRFLLMGHSCLSPLTNSRP 137
Query: 298 IAKANGISKVL 330
I K+N S ++
Sbjct: 138 IPKSNDPSPLM 148
>At1g08370.1 68414.m00926 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; contains some similarity to
transcription factor [Danio rerio]
gi|15617376|emb|CAC69871
Length = 367
Score = 27.1 bits (57), Expect = 3.0
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -2
Query: 287 AGPHLVPATSIETSPPI 237
A PHL+P S+ T+PP+
Sbjct: 281 AQPHLIPGVSMPTAPPL 297
>At5g57550.1 68418.m07190 xyloglucan:xyloglucosyl transferase /
xyloglucan endotransglycosylase / endo-xyloglucan
transferase (XTR3) identical to endoxyloglucan
transferase GI:5533317 from [Arabidopsis thaliana]
Length = 284
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -3
Query: 289 QQVHIWFQPQALRHPLQFSWQ-HSMYFGLLEIVP 191
QQ H+WF P A H W H + F +++ +P
Sbjct: 134 QQFHLWFDPTADFHTYSVLWNPHHIVF-MVDDIP 166
>At5g07570.1 68418.m00867 glycine/proline-rich protein contains
similarity to flagelliform silk protein [Nephila
clavipes] gi|7106224|gb|AAF36090
Length = 1504
Score = 26.6 bits (56), Expect = 4.0
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = +3
Query: 228 CQENWRGCLNACGWNQMWTCCRIHC 302
C W C C W Q W CR +C
Sbjct: 33 CGRFWFRCWFCC-WFQFWFRCRFYC 56
>At4g30290.1 68417.m04305 xyloglucan:xyloglucosyl transferase,
putative / xyloglucan endotransglycosylase, putative /
endo-xyloglucan transferase, putative similar to
xyloglucan endotransglycosylase TCH4 GI:886116 from
[Arabidopsis thaliana]
Length = 277
Score = 26.6 bits (56), Expect = 4.0
Identities = 10/33 (30%), Positives = 15/33 (45%)
Frame = -3
Query: 289 QQVHIWFQPQALRHPLQFSWQHSMYFGLLEIVP 191
QQ H+WF P A H +W ++ +P
Sbjct: 129 QQFHLWFDPTANFHTYCITWNPQRIIFTVDGIP 161
>At5g65730.1 68418.m08272 xyloglucan:xyloglucosyl transferase,
putative / xyloglucan endotransglycosylase, putative /
endo-xyloglucan transferase, putative similar to
endo-xyloglucan transferase GI:2244732 from [Gossypium
hirsutum]
Length = 292
Score = 26.2 bits (55), Expect = 5.3
Identities = 10/33 (30%), Positives = 15/33 (45%)
Frame = -3
Query: 289 QQVHIWFQPQALRHPLQFSWQHSMYFGLLEIVP 191
Q+V++WF P H W H ++ VP
Sbjct: 140 QRVNLWFDPSMDYHTYTILWSHKHIVFYVDDVP 172
>At4g30270.1 68417.m04303 MERI-5 protein (MERI-5) (MERI5B) /
endo-xyloglucan transferase / xyloglucan
endo-1,4-beta-D-glucanase (SEN4) identical to
endo-xyloglucan transferase gi:944810, SP|P24806 MERI-5
protein precursor (Endo-xyloglucan transferase)
(Xyloglucan endo-1,4-beta-D-glucanase) {Arabidopsis
thaliana}
Length = 269
Score = 26.2 bits (55), Expect = 5.3
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = -3
Query: 289 QQVHIWFQPQALRHPLQFSW 230
QQ H+WF P A H W
Sbjct: 128 QQFHLWFDPTANFHTYSILW 147
>At5g05880.1 68418.m00647 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 451
Score = 25.8 bits (54), Expect = 7.0
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 7 GLQEFGTRL-DLSLINYLINKNSIS*TKSCLSKCL 108
GL E TR D+ L+ L+N+N S + CL K L
Sbjct: 63 GLSETETRTRDVKLLITLLNQNCESPVRECLRKLL 97
>At5g21960.1 68418.m02551 AP2 domain-containing transcription
factor, putative similar to TINY (GI:1246403)
[Arabidopsis thaliana]
Length = 216
Score = 25.4 bits (53), Expect = 9.3
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 111 PNSRHLFLYCTAASFAKYFSARRAQQ*GTISSNPKYIECCQENW 242
PNS H F + T S YF ++ QQ +SS+ Y C++++
Sbjct: 164 PNSDHEFGFFTDDSTNLYFPTQQQQQ-HQLSSDFYYDGACEDDF 206
>At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear
transport factor 2 (NTF2) domain
Length = 1294
Score = 25.4 bits (53), Expect = 9.3
Identities = 23/77 (29%), Positives = 37/77 (48%)
Frame = -2
Query: 323 LDIPFALAMDSAAGPHLVPATSIETSPPIFLAAFNVFWVAGDSTSLLCSASTKVLCKRRS 144
LD+ FAL D+ + A SI S P++ AF V + D + AS +C+ ++
Sbjct: 754 LDVTFALIEDALKKFGPINAISIIKSGPLYKFAF-VDFEKADVANRAIMASPVRICE-KN 811
Query: 143 CAVQK*MPAIGCKHFDK 93
VQK + A K + +
Sbjct: 812 VNVQKKLSAGAGKRYTR 828
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,425,994
Number of Sequences: 28952
Number of extensions: 138189
Number of successful extensions: 369
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 380568784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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