Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31152
         (454 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|...    27   1.0  
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    25   4.1  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    25   5.4  
SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr 2|||Ma...    24   9.5  

>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +2

Query: 305 VKCIWRRKLSFRMLSSWYCRNLRRCRSSIC 394
           VKCI    LS  +LS  + RNL R   S C
Sbjct: 362 VKCICLTDLSVILLSGSFSRNLERVHLSYC 391


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +1

Query: 109 IHEIRFSCNSSLIVSTPASDLYVLTLVSFV 198
           I E+ FS  +S IVS  A D+Y+  + SFV
Sbjct: 220 IDELDFSVLNS-IVSLDAKDIYIRVICSFV 248


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1234

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +2

Query: 209  QVIFNPVSINQFVLDNAVI 265
            + +  PV ++++VLDNA+I
Sbjct: 1028 ETVEGPVKLSEYVLDNAII 1046


>SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 413

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 102 RCMLNQSKTITV*QINTHCATSFSENPRAEFGTR 1
           RC++ QS+   +  I     T+ S  P A FG +
Sbjct: 80  RCLVEQSEDFDIAIIGVPFDTAVSHRPGARFGPK 113


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,802,808
Number of Sequences: 5004
Number of extensions: 33490
Number of successful extensions: 47
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)