Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31152
         (454 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0732 - 27232299-27232535,27232717-27232746,27233094-272331...    27   7.1  
01_05_0685 + 24273331-24273569,24275429-24275465,24275739-242758...    27   7.1  
02_05_1080 - 33955034-33955117,33955199-33955300,33955381-339555...    27   9.3  

>03_05_0732 -
           27232299-27232535,27232717-27232746,27233094-27233155,
           27233975-27234005,27234618-27234713,27234881-27234969,
           27235687-27236263
          Length = 373

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 394 AYRTSASSQITTIPR*QHSEA*LPPPNALHP 302
           A R+S  S  + +P   H    LPPP   HP
Sbjct: 6   ALRSSVGSHSSALPPSYHHHRRLPPPQQQHP 36


>01_05_0685 +
           24273331-24273569,24275429-24275465,24275739-24275808,
           24275978-24276082,24276205-24276355,24276454-24276536,
           24276619-24276712,24276796-24276883
          Length = 288

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 268 FTYLNFNPLNNMGEVHLAEEV 330
           F YLNF P N +G   + EE+
Sbjct: 250 FQYLNFKPYNGLGHYTIPEEM 270


>02_05_1080 -
           33955034-33955117,33955199-33955300,33955381-33955510,
           33955674-33955783,33955827-33955950,33956042-33956136,
           33956205-33956300,33956419-33956551,33956668-33956759,
           33956844-33956948,33957201-33957335,33957421-33957526,
           33957621-33957748,33957860-33957958,33958049-33958228,
           33958303-33958446,33958533-33958647,33958739-33958905
          Length = 714

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = -3

Query: 74  LPYNRLTLTVPRHLVRTLVPNS 9
           LP N L L+V RHLV+T+VP +
Sbjct: 242 LPRNML-LSVDRHLVQTIVPGT 262


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,085,027
Number of Sequences: 37544
Number of extensions: 192890
Number of successful extensions: 301
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 301
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)