Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31152
         (454 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57320.1 68418.m07160 villin, putative similar to villin 2 (V...    28   3.4  
At2g07690.1 68415.m00993 minichromosome maintenance family prote...    27   7.8  

>At5g57320.1 68418.m07160 villin, putative similar to villin 2
           (VLN2) [Arabidopsis thaliana] GI:3415115, villin 3
           (VLN3) [Arabidopsis thaliana] GI:3415117; contains Pfam
           profiles PF00626: Gelsolin repeat, PF02209: Villin
           headpiece domain
          Length = 962

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
 Frame = -3

Query: 452 YRTEGAGP--VELIQLSPSLICI-SNFCIVSDYDNTKMTTFGSLTSS 321
           +R +G+GP  ++ IQ+  +   + S+ C +   D+T  T  G+LTSS
Sbjct: 524 FRVQGSGPENMQAIQIEAASAGLNSSHCYILHGDSTVFTWCGNLTSS 570


>At2g07690.1 68415.m00993 minichromosome maintenance family protein
           / MCM family protein similar to SP|P55862 DNA
           replication licensing factor MCM5 (CDC46 homolog)
           {Xenopus laevis}; contains Pfam profile PF00493:
           MCM2/3/5 family
          Length = 727

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = -3

Query: 74  LPYNRLTLTVPRHLVRTLVPNS 9
           LP N L L+V RHLV+T+VP +
Sbjct: 238 LPRNML-LSVDRHLVQTIVPGT 258


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,184,608
Number of Sequences: 28952
Number of extensions: 166335
Number of successful extensions: 299
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 299
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 742437000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)