Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31150
(647 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF026212-4|AAF99973.2| 386|Caenorhabditis elegans Hypothetical ... 29 2.8
Z48783-2|CAC42295.1| 805|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z48783-1|CAA88701.1| 780|Caenorhabditis elegans Hypothetical pr... 28 6.6
AF233652-1|AAF63475.1| 780|Caenorhabditis elegans RFX-type tran... 28 6.6
AF226156-1|AAF61564.1| 805|Caenorhabditis elegans RFX-like tran... 28 6.6
Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical pr... 27 8.7
U58753-8|AAC24439.1| 633|Caenorhabditis elegans Hypothetical pr... 27 8.7
U58753-7|AAC24433.1| 581|Caenorhabditis elegans Hypothetical pr... 27 8.7
U41021-9|AAQ81276.1| 408|Caenorhabditis elegans Temporarily ass... 27 8.7
U41021-8|AAQ81275.1| 406|Caenorhabditis elegans Temporarily ass... 27 8.7
>AF026212-4|AAF99973.2| 386|Caenorhabditis elegans Hypothetical
protein F52G3.5 protein.
Length = 386
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +3
Query: 354 TTTCTRPRTRFSL-KKPARSRTLAPKTKASRSRDSTNTLAPT 476
TTT P T KK ++R+ PKT + + +T T APT
Sbjct: 195 TTTTEEPSTTSEYRKKSKKNRSKRPKTTKTTTTSTTTTEAPT 236
>Z48783-2|CAC42295.1| 805|Caenorhabditis elegans Hypothetical
protein F33H1.1b protein.
Length = 805
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 284 PSGAGYDYKYGIIRYDNDVAPEGYHYLYETEN 379
P+G ++ Y I Y N V P G + LY ++
Sbjct: 178 PNGTREEFDYNQIEYGNAVTPNGTYTLYAPDS 209
>Z48783-1|CAA88701.1| 780|Caenorhabditis elegans Hypothetical
protein F33H1.1a protein.
Length = 780
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 284 PSGAGYDYKYGIIRYDNDVAPEGYHYLYETEN 379
P+G ++ Y I Y N V P G + LY ++
Sbjct: 153 PNGTREEFDYNQIEYGNAVTPNGTYTLYAPDS 184
>AF233652-1|AAF63475.1| 780|Caenorhabditis elegans RFX-type
transcription factor DAF-19 short variant protein.
Length = 780
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 284 PSGAGYDYKYGIIRYDNDVAPEGYHYLYETEN 379
P+G ++ Y I Y N V P G + LY ++
Sbjct: 153 PNGTREEFDYNQIEYGNAVTPNGTYTLYAPDS 184
>AF226156-1|AAF61564.1| 805|Caenorhabditis elegans RFX-like
transcription factor DAF-19 protein.
Length = 805
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 284 PSGAGYDYKYGIIRYDNDVAPEGYHYLYETEN 379
P+G ++ Y I Y N V P G + LY ++
Sbjct: 178 PNGTREEFDYNQIEYGNAVTPNGTYTLYAPDS 209
>Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical
protein C29E6.1a protein.
Length = 812
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +3
Query: 348 KATTTCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNTLAPTV 479
+ TTT +P T S KK + T P K S+ +T T +P V
Sbjct: 375 QVTTTTKKPSTTTSTKKLTTTTTTTP--KPSQKPTTTTTKSPVV 416
>U58753-8|AAC24439.1| 633|Caenorhabditis elegans Hypothetical
protein W03B1.9 protein.
Length = 633
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +2
Query: 491 VDYTADENGFVADGAHIPK*I*SRSIF*GYFRKKKKKNSRGG 616
+D D+N F +PK + IF YF KKKKN G
Sbjct: 257 MDQYDDDNFFSQTRHFLPKNLKILVIFGNYFPMKKKKNQLSG 298
>U58753-7|AAC24433.1| 581|Caenorhabditis elegans Hypothetical
protein W03B1.5 protein.
Length = 581
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +2
Query: 491 VDYTADENGFVADGAHIPK*I*SRSIF*GYFRKKKKKNSRGG 616
+D D+N F +PK + IF YF KKKKN G
Sbjct: 205 MDQYDDDNFFSQTRHFLPKNLKILVIFGNYFPMKKKKNQLSG 246
>U41021-9|AAQ81276.1| 408|Caenorhabditis elegans Temporarily
assigned gene nameprotein 24, isoform b protein.
Length = 408
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -2
Query: 637 IGRIGYRAPPRVFFFFF 587
IG G+ APP VF FFF
Sbjct: 348 IGAFGHEAPPLVFKFFF 364
>U41021-8|AAQ81275.1| 406|Caenorhabditis elegans Temporarily
assigned gene nameprotein 24, isoform a protein.
Length = 406
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -2
Query: 637 IGRIGYRAPPRVFFFFF 587
IG G+ APP VF FFF
Sbjct: 346 IGAFGHEAPPLVFKFFF 362
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,305,286
Number of Sequences: 27780
Number of extensions: 197449
Number of successful extensions: 738
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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