Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31145
         (402 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces...   160   6e-41
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    28   0.62 
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    26   2.5  
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    25   4.4  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    25   4.4  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    25   5.8  
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy...    24   7.7  
SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Ma...    24   7.7  

>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score =  160 bits (389), Expect = 6e-41
 Identities = 75/112 (66%), Positives = 92/112 (82%)
 Frame = +2

Query: 14  VRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPC 193
           +RYKL+ GLAVRRA YGVLR++ME+GA+GCEVV+SGKLR  RAKSMKF DG MIHSG P 
Sbjct: 107 LRYKLLAGLAVRRAAYGVLRYVMEAGAKGCEVVISGKLRAARAKSMKFADGFMIHSGQPA 166

Query: 194 NDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDE 349
            D++++ATRHVLLRQGVLG+KVKIMLP   + K   KK  PD ++V +PK+E
Sbjct: 167 VDFIDSATRHVLLRQGVLGVKVKIMLP---EPKTRQKKSLPDIVVVLDPKEE 215


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 27.9 bits (59), Expect = 0.62
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +2

Query: 68   LRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRH 223
            + F ME   +  + ++  +L+     S K  D ++I  GD  ND + T+ RH
Sbjct: 1868 IHFAMEFLHKNTKSLLDSELKDGNYISAKGKDVIVIGGGDTGNDCLGTSVRH 1919


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +1

Query: 133  STCQINEVCR-WTHDPLWRPLQ*LRQHCYQT 222
            + C   + CR W   P W+ +  + Q+C+ T
Sbjct: 1420 TVCNRKKACRLWNFKPHWQVITRIPQYCHDT 1450


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 131 GQRAKSMKFVDGLMIHSGDPCNDYVN 208
           G+R K + F D    H G P  DY++
Sbjct: 218 GRREKLLVFGDDYDSHDGTPIRDYIH 243


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 22/76 (28%), Positives = 33/76 (43%)
 Frame = +3

Query: 174 STLETLAMITSTLLPDMCFSDKEY*ESRSKSCCRGTSKARTARRSHNQTTSW*QSPRTSP 353
           ST   + + TS++       D+E   + SK+C    SKA          +S   SPR +P
Sbjct: 215 STASPIPVRTSSVSSTYLTQDRE---ASSKNCL---SKALAFSSIEPPASSASTSPRNTP 268

Query: 354 CPSRGGPVPNSPYSES 401
            PS  G   N+  + S
Sbjct: 269 TPSNNGTSINANVTSS 284


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 188 PCNDYVNTATRHVL 229
           PC+DYV  A R VL
Sbjct: 679 PCSDYVEAAVRQVL 692


>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = -1

Query: 348 SSLGSVTRMWSGCGFFGPFLPCWSHGNMILTLIPSTPCLRST 223
           SS G ++ +     +    LPCWS G  +  L  ++  L  T
Sbjct: 110 SSFGEISFLHLSSRYHSVSLPCWSSGTGLAGLFGASSYLVMT 151


>SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +2

Query: 290 KNGPKKPQPDHILVTEPKDEPVPL-EGGPGT 379
           K  PKK  P+   +T P   P+ L E  PGT
Sbjct: 163 KLSPKKTSPNSGYITSPLRHPILLSETEPGT 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,690,977
Number of Sequences: 5004
Number of extensions: 34745
Number of successful extensions: 105
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)