Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31145
(402 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29492| Best HMM Match : Ribosomal_S3_C (HMM E-Value=1.8e-28) 206 4e-54
SB_3270| Best HMM Match : MMPL (HMM E-Value=0.68) 29 1.4
SB_51602| Best HMM Match : Glyco_hydro_38C (HMM E-Value=1.1e-31) 29 1.4
SB_20734| Best HMM Match : Abi_HHR (HMM E-Value=3.59994e-42) 29 1.4
SB_41411| Best HMM Match : RVT_1 (HMM E-Value=0.00044) 29 1.9
SB_1330| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.9) 28 2.5
SB_11146| Best HMM Match : K_tetra (HMM E-Value=1.1e-34) 28 3.3
SB_22738| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.3
SB_55109| Best HMM Match : fn3 (HMM E-Value=0.017) 27 4.3
SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0) 27 4.3
SB_48788| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05) 27 7.6
SB_58863| Best HMM Match : Fibrinogen_BP (HMM E-Value=2) 26 10.0
SB_41601| Best HMM Match : zf-C2H2 (HMM E-Value=0.0019) 26 10.0
>SB_29492| Best HMM Match : Ribosomal_S3_C (HMM E-Value=1.8e-28)
Length = 240
Score = 206 bits (504), Expect = 4e-54
Identities = 94/117 (80%), Positives = 103/117 (88%)
Frame = +2
Query: 14 VRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPC 193
+RYKLIGGLAVRRACYGVLRFIMESGA+GCEVVVSGKLRGQRAKSMKFVDGLM+H+G+P
Sbjct: 105 LRYKLIGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMVHAGEPT 164
Query: 194 NDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLE 364
YV+TA RHV LRQGVLGIKVKIMLPWD GK GPKKP PD + + EPKDE VP +
Sbjct: 165 THYVDTAVRHVYLRQGVLGIKVKIMLPWDPTGKTGPKKPLPDQVSIVEPKDEVVPAQ 221
>SB_3270| Best HMM Match : MMPL (HMM E-Value=0.68)
Length = 401
Score = 29.1 bits (62), Expect = 1.4
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +1
Query: 118 WQAAWSTCQINEVCRWTHDPLW 183
W+ AW+ C + E +T++P W
Sbjct: 76 WKQAWTPCSLQETTIYTNNPPW 97
>SB_51602| Best HMM Match : Glyco_hydro_38C (HMM E-Value=1.1e-31)
Length = 976
Score = 29.1 bits (62), Expect = 1.4
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +1
Query: 112 CIWQAAWSTCQINEVCRWTHDPLWRP 189
C W + W + E WTH P RP
Sbjct: 185 CRWLSQWKQSEEEESVLWTHSPARRP 210
>SB_20734| Best HMM Match : Abi_HHR (HMM E-Value=3.59994e-42)
Length = 426
Score = 29.1 bits (62), Expect = 1.4
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +1
Query: 241 STRNQGQNHVAVGPARQERPEEATTRP 321
+++N + H + PA+QE+PE + +P
Sbjct: 162 TSKNTSRTHKIIAPAKQEKPERYSRKP 188
>SB_41411| Best HMM Match : RVT_1 (HMM E-Value=0.00044)
Length = 647
Score = 28.7 bits (61), Expect = 1.9
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Frame = +2
Query: 104 EVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQG-VLGIKVKIMLPWD 280
E + S + R++ MK + GL + CN+ +T VL + G +L K +I W
Sbjct: 236 EEIASEAEKAARSQHMKTLYGL---TKKLCNERPRHSTA-VLDKDGNLLSKKEEIQRRWT 291
Query: 281 QQGKNGPKKPQPDHILVTEPKDEPVPLEGGPGTQ 382
+ + K+ QPD+ + EP+DE V E G T+
Sbjct: 292 EHFREVLKREQPDNPI--EPEDE-VEFEFGELTE 322
>SB_1330| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.9)
Length = 482
Score = 28.3 bits (60), Expect = 2.5
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = +1
Query: 268 VAVGPARQERPEEATTRPH 324
VA GPAR PE TRPH
Sbjct: 107 VAAGPARITSPEPPATRPH 125
>SB_11146| Best HMM Match : K_tetra (HMM E-Value=1.1e-34)
Length = 336
Score = 27.9 bits (59), Expect = 3.3
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 279 TSKARTARRSHNQTTSW*QSPRTSPCPSRGGPVP 380
+SKA +R+ + S+ S + P SRGGPVP
Sbjct: 193 SSKAFYVKRNREKIWSFLTSSLSIPSTSRGGPVP 226
>SB_22738| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 296
Score = 27.9 bits (59), Expect = 3.3
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = +2
Query: 101 CEVVVSGKLRGQRAKSMKFVDGLMIHSG--DPCNDYVNTATRHVLLRQGVLGIKVKIMLP 274
CE + + KL+ +K+ + G + D C+ ++N + Q LGIK+ L
Sbjct: 136 CEWLTANKLQFHPSKTKSMIIGSSYNLAKIDQCSVFINNTEVTRVKSQKCLGIKIDDKLN 195
Query: 275 WDQQGKNGPKKPQP 316
W KK P
Sbjct: 196 WGNHIDKFCKKAGP 209
>SB_55109| Best HMM Match : fn3 (HMM E-Value=0.017)
Length = 339
Score = 27.5 bits (58), Expect = 4.3
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 131 GQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 265
G++ ++ IH G P DY + L R+GV G+ V I
Sbjct: 25 GKKTAGRLRLERTQIHGGSPVIDYKVEVDQVKLAREGVTGVPVVI 69
>SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 4303
Score = 27.5 bits (58), Expect = 4.3
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +1
Query: 181 WRPLQ*LRQHCYQTCASQTRSTRNQGQNHVAVGPARQERPEEA 309
WRP Q Q+C +T R+ NH+ V PA+ E+A
Sbjct: 759 WRPYQ--CQYCGYYFKCETSIIRHMESNHIGVTPAQASVFEQA 799
>SB_48788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 226
Score = 26.6 bits (56), Expect = 7.6
Identities = 12/51 (23%), Positives = 26/51 (50%)
Frame = +2
Query: 197 DYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDE 349
++++ HVLL + + I+ K+ + D+ GP+ Q +++ K E
Sbjct: 142 EWISPPREHVLLAKQSIEIETKVWIAIDRISNIGPRTVQEENLQTQNEKFE 192
>SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05)
Length = 1023
Score = 26.6 bits (56), Expect = 7.6
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 219 DMCFSDKEY*ESRSKSCCRGTSKARTARRSHNQTT 323
++C D++Y +R +S R + RRS + TT
Sbjct: 644 ELCVGDEDYTSARPRSSSRPSEGLEELRRSRHPTT 678
>SB_58863| Best HMM Match : Fibrinogen_BP (HMM E-Value=2)
Length = 1037
Score = 26.2 bits (55), Expect = 10.0
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +2
Query: 251 IKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEGGPG 376
++V+ L + G+N PK+P + I V E K E + E PG
Sbjct: 41 VRVEAYLKQQRAGENKPKEPAAEKI-VPESKSE-ISAEENPG 80
>SB_41601| Best HMM Match : zf-C2H2 (HMM E-Value=0.0019)
Length = 1008
Score = 26.2 bits (55), Expect = 10.0
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = +3
Query: 282 SKARTARRSHNQTTSW*QSPRTSPCPSRGGPVPNSPY 392
S+ T S SW QSPR P+R PVP Y
Sbjct: 48 SRTPTPPMSVQNAPSWNQSPRLGMSPAR-PPVPAGQY 83
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,611,623
Number of Sequences: 59808
Number of extensions: 301189
Number of successful extensions: 936
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 715479706
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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