Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31145
(402 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g31610.1 68415.m03862 40S ribosomal protein S3 (RPS3A) 181 2e-46
At3g53870.1 68416.m05951 40S ribosomal protein S3 (RPS3B) riboso... 177 2e-45
At5g35530.1 68418.m04226 40S ribosomal protein S3 (RPS3C) 177 3e-45
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex... 29 1.2
At5g18570.1 68418.m02195 GTP1/OBG family protein similar to SP|P... 28 2.0
At1g09830.1 68414.m01105 phosphoribosylamine--glycine ligase (PU... 28 2.7
At2g36200.1 68415.m04444 kinesin motor protein-related 27 3.5
At4g34930.1 68417.m04952 1-phosphatidylinositol phosphodiesteras... 27 4.7
At4g34920.1 68417.m04951 1-phosphatidylinositol phosphodiesteras... 27 4.7
At2g44230.1 68415.m05504 expressed protein 27 4.7
At3g46050.1 68416.m04983 kelch repeat-containing F-box family pr... 27 6.2
>At2g31610.1 68415.m03862 40S ribosomal protein S3 (RPS3A)
Length = 250
Score = 181 bits (440), Expect = 2e-46
Identities = 81/114 (71%), Positives = 95/114 (83%)
Frame = +2
Query: 14 VRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPC 193
+RYKL+GGLAVRRACYGVLRF+MESGA+GCEV+VSGKLR RAKSMKF DG M+ SG P
Sbjct: 105 LRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPT 164
Query: 194 NDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPV 355
+Y++ A RHVLLRQGVLGIKVKIML WD GK+GPK P PD +++ PKD+ V
Sbjct: 165 KEYIDAAVRHVLLRQGVLGIKVKIMLDWDPTGKSGPKTPLPDVVIIHAPKDDVV 218
>At3g53870.1 68416.m05951 40S ribosomal protein S3 (RPS3B) ribosomal
protein S3a - Xenopus laevis, PIR:R3XL3A
Length = 249
Score = 177 bits (432), Expect = 2e-45
Identities = 78/112 (69%), Positives = 95/112 (84%)
Frame = +2
Query: 14 VRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPC 193
+RYKL+GGLAVRRACYGVLRF+MESGA+GCEV+VSGKLR RAKSMKF DG M+ SG P
Sbjct: 105 LRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPT 164
Query: 194 NDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDE 349
+Y+++A RHVLLRQGVLGIKVK+ML WD +G +GPK P PD +++ PK+E
Sbjct: 165 KEYIDSAVRHVLLRQGVLGIKVKVMLDWDPKGISGPKTPLPDVVIIHSPKEE 216
>At5g35530.1 68418.m04226 40S ribosomal protein S3 (RPS3C)
Length = 248
Score = 177 bits (430), Expect = 3e-45
Identities = 78/114 (68%), Positives = 94/114 (82%)
Frame = +2
Query: 14 VRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPC 193
+RYKL+GGLAVRRACYGVLRF+MESGA+GCEV+VSGKLR RAKSMKF DG M+ SG P
Sbjct: 105 LRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPT 164
Query: 194 NDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPV 355
+Y++ A RHVLLRQGVLG+KVKIML WD +GK GP P PD +++ PK++ V
Sbjct: 165 KEYIDAAVRHVLLRQGVLGLKVKIMLDWDPKGKQGPMTPLPDVVIIHTPKEDDV 218
>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 727
Score = 29.1 bits (62), Expect = 1.2
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +3
Query: 258 SKSCCRGTSKARTARRSHNQTTSW*QSPRTSPCPSRGGPVPNSPYSES 401
SK C G S T +S + + P P P + P PN PY++S
Sbjct: 381 SKDKCAGGSSQATPSKSPSPVPT---RPVHKPQPPKESPQPNDPYNQS 425
>At5g18570.1 68418.m02195 GTP1/OBG family protein similar to
SP|P20964 Spo0B-associated GTP-binding protein {Bacillus
subtilis}; contains Pfam profile PF01018: GTP1/OBG
family
Length = 681
Score = 28.3 bits (60), Expect = 2.0
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Frame = +2
Query: 47 RRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDG--LMIHSGDPCNDYVNTATR 220
RRA +SG R VV +G R + + +++D H D C VN + +
Sbjct: 578 RRAAINEFEVFRDSGTRAWHVVGAGLQRFVQMTNWRYMDSDKRFQHVLDACG--VNKSLK 635
Query: 221 HVLLRQGVLGIKVKIMLPWDQQGKNGPKKP 310
++ +++G I ++ L W NG +P
Sbjct: 636 NMGVKEGDTVIVGEMELIW-HDSANGSSRP 664
>At1g09830.1 68414.m01105 phosphoribosylamine--glycine ligase (PUR2)
Identical to phosphoribosylamine--glycine ligase,
chloroplast [precursor] SP:P52420 from [Arabidopsis
thaliana]
Length = 532
Score = 27.9 bits (59), Expect = 2.7
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 89 GARGCEVVVSGKLRGQRAKSMKFVDG 166
G+ GC+VVV L G+ A VDG
Sbjct: 273 GSAGCQVVVEEFLEGEEASFFALVDG 298
>At2g36200.1 68415.m04444 kinesin motor protein-related
Length = 1056
Score = 27.5 bits (58), Expect = 3.5
Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Frame = -3
Query: 271 QHDFDLDS*YSLSEKHMSGSSVDVI--IARVSRVDHESIYKL 152
QHD ++DS + +EK ++ +S D+I I R+S + S+ K+
Sbjct: 865 QHDAEVDSARTAAEKDVTKNSDDIIQQIERMSEDEKASVSKI 906
>At4g34930.1 68417.m04952 1-phosphatidylinositol
phosphodiesterase-related contains weak similarity to
1-phosphatidylinositol phosphodiesterase precursor (EC
4.6.1.13) (Phosphatidylinositol diacylglycerol-lyase)
(Phosphatidylinositol- specific phospholipase C)
(PI-PLC). (Swiss-Prot:P34024) [Listeria monocytogenes]
Length = 391
Score = 27.1 bits (57), Expect = 4.7
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +3
Query: 339 PRTSPCPSRGGPVPNSPY 392
PR SP PSRGG + NS Y
Sbjct: 261 PRESPKPSRGGILWNSDY 278
>At4g34920.1 68417.m04951 1-phosphatidylinositol
phosphodiesterase-related contains weak similarity to
1-phosphatidylinositol phosphodiesterase precursor (EC
3.1.4.10) (Phosphatidylinositol-specific phospholipase
C) (PI-PLC). (Swiss-Prot:P34024) [Listeria
monocytogenes]
Length = 318
Score = 27.1 bits (57), Expect = 4.7
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +3
Query: 339 PRTSPCPSRGGPVPNSPY 392
PR SP PSRGG + NS Y
Sbjct: 194 PRESPKPSRGGILWNSDY 211
>At2g44230.1 68415.m05504 expressed protein
Length = 542
Score = 27.1 bits (57), Expect = 4.7
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -1
Query: 369 PPSRGTGSSLGSVTRMWSGCGFFGPFLPCWSHGNMILTLIPSTP 238
P +RGT +S SV +S P LPC + N + +PS P
Sbjct: 195 PVNRGTQASGVSVGTFFSNSP--NPALPCLKNNNFDFSCMPSKP 236
>At3g46050.1 68416.m04983 kelch repeat-containing F-box family
protein contains F-box domain Pfam:PF00646 and Kelch
motif Pfam:PF01344
Length = 370
Score = 26.6 bits (56), Expect = 6.2
Identities = 8/18 (44%), Positives = 9/18 (50%)
Frame = +1
Query: 43 CTSCLLWCSPFHHGIWCP 96
C L+WC P WCP
Sbjct: 248 CEGVLVWCEPEEDRGWCP 265
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,270,227
Number of Sequences: 28952
Number of extensions: 200569
Number of successful extensions: 576
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 585758608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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