Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31142
(794 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 485 e-138
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 279 3e-76
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 264 1e-71
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 175 8e-45
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 97 2e-21
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 89 9e-19
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 88 2e-18
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 80 4e-16
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 68 2e-12
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 38 0.002
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 30 0.33
SPAC1296.04 |mug65||spore wall assembly protein |Schizosaccharom... 27 4.1
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 5.4
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 485 bits (1197), Expect = e-138
Identities = 225/250 (90%), Positives = 238/250 (95%)
Frame = +3
Query: 15 GVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEH 194
G+MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+ NWDDMEKIWHHTFYNELRVAPEEH
Sbjct: 42 GIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEH 101
Query: 195 PVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSH 374
P LLTEAPLNPK+NREKMTQI+FETFN+PA YVAIQAVLSLYASGRTTGIVLDSGDGV+H
Sbjct: 102 PCLLTEAPLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTH 161
Query: 375 TVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVAL 554
TVPIYEGYALPHAI+RLDLAGRDLTDYLMKIL ERGY+F+TTAEREIVRDIKEKLCYVAL
Sbjct: 162 TVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERGYTFSTTAEREIVRDIKEKLCYVAL 221
Query: 555 DFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPXXLGMESCGIHETVYNS 734
DFEQE+ TAA S+SLEKSYELPDGQVITIGNERFR PEALFQP LG+E+ GIHE YNS
Sbjct: 222 DFEQELQTAAQSSSLEKSYELPDGQVITIGNERFRAPEALFQPSALGLENAGIHEATYNS 281
Query: 735 IMKCDVDIRK 764
IMKCDVDIRK
Sbjct: 282 IMKCDVDIRK 291
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 279 bits (684), Expect = 3e-76
Identities = 124/242 (51%), Positives = 177/242 (73%)
Frame = +3
Query: 39 KDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 218
KD VGDEA++ R +L +KYP+E+GII ++++M ++W +TF+ +L++ P +LLTE P
Sbjct: 50 KDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPP 109
Query: 219 LNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGY 398
+NP ANREKM + MFE + +YVAIQAVLSLYA G ++G+V+DSGDGV+H VP+YE
Sbjct: 110 MNPVANREKMCETMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESV 169
Query: 399 ALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMAT 578
L H + RLD+AGRD T YL+ +L +GY+F TA+ E VR++KEKLCYV+ D E +
Sbjct: 170 VLNHLVGRLDVAGRDATRYLISLLLRKGYAFNRTADFETVREMKEKLCYVSYDLELDHKL 229
Query: 579 AAASTSLEKSYELPDGQVITIGNERFRCPEALFQPXXLGMESCGIHETVYNSIMKCDVDI 758
+ +T L ++Y LPDG+VI +G+ER+ CPE LFQP +G E G+ E ++++I DVDI
Sbjct: 230 SEETTVLMRNYTLPDGRVIKVGSERYECPECLFQPHLVGSEQPGLSEFIFDTIQAADVDI 289
Query: 759 RK 764
RK
Sbjct: 290 RK 291
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 264 bits (646), Expect = 1e-71
Identities = 122/249 (48%), Positives = 172/249 (69%), Gaps = 1/249 (0%)
Frame = +3
Query: 18 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNE-LRVAPEEH 194
VM QKD +VG EAQ+ RG+L ++ PIE GII NW DME+IW + + ++ L PEEH
Sbjct: 47 VMPSSIQKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEH 106
Query: 195 PVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSH 374
P+LLTE PL N+EK+ + +ET N PA+ ++Q VL+LYAS RTTGIVL+ GDG++H
Sbjct: 107 PLLLTEPPLANIRNKEKIAEYFYETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTH 166
Query: 375 TVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVAL 554
+VPIY+G+++P AI + ++ GRD+TDYL L + G+ ++AE+EIVR+IKEK CYVA
Sbjct: 167 SVPIYDGFSIPSAIQQEEIGGRDVTDYLQLQLRKSGHELVSSAEKEIVREIKEKCCYVAS 226
Query: 555 DFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPXXLGMESCGIHETVYNS 734
DF E+ + +Y+LPD Q IT+G E F PE LF P +G E+ G+H ++ S
Sbjct: 227 DFRSEIESWTEHKPQIHTYQLPDNQTITLGTECFSAPEVLFNPEMMGSEASGLHIQLFKS 286
Query: 735 IMKCDVDIR 761
I+ D+D+R
Sbjct: 287 ILLSDIDLR 295
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 175 bits (425), Expect = 8e-45
Identities = 103/258 (39%), Positives = 142/258 (55%), Gaps = 16/258 (6%)
Frame = +3
Query: 42 DSYVGDEAQSKRGI-LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 218
D ++G++A K +L YPI HG I NWD ME+ W + + LR PE+H LLTE P
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132
Query: 219 LNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSH 374
LNP NRE +IMFE+FN +Y+A+QAVL+L AS + TG V+DSGDGV+H
Sbjct: 133 LNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTH 192
Query: 375 TVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY--SFTTTAEREIVRDIKEKLCYV 548
+P+ EGY + +I + LAGRD+T ++ +L +R S TAER IKE+ CYV
Sbjct: 193 IIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDSSLKTAER-----IKEECCYV 247
Query: 549 ALDFEQEMA--TAAASTSLEKSYELPDGQ--VITIGNERFRCPEALFQPXXLGME-SCGI 713
D +E + L+ + E G I +G ERF PE F P + +
Sbjct: 248 CPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIASSDFLTPL 307
Query: 714 HETVYNSIMKCDVDIRKG 767
E V N + +D+RKG
Sbjct: 308 PELVDNVVQSSPIDVRKG 325
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 97.5 bits (232), Expect = 2e-21
Identities = 54/195 (27%), Positives = 101/195 (51%), Gaps = 3/195 (1%)
Frame = +3
Query: 30 MGQKDSYVGDEAQSKRGILTL-KYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLL 206
+ + + VG++ + G ++ + P E +I+NWD ME++ +TF +L + EHP+ +
Sbjct: 62 LSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICM 120
Query: 207 TEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVSHTV 380
TE NP R MT+++FE +N+P++ I + S Y + + ++GIVL+ G+ SH +
Sbjct: 121 TEPLANPTYVRSTMTELLFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVI 180
Query: 381 PIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDF 560
P+ G + R+ G + YL+K+ + SF + C+V+ D+
Sbjct: 181 PVLNGERILSEAKRISWGGSQSSSYLLKLFQIKYPSFPIKMLPSQAELLMHDHCHVSSDY 240
Query: 561 EQEMATAAASTSLEK 605
++A A LE+
Sbjct: 241 THDIAHALDRDILER 255
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 648 ERFRCPEALFQPXXLGMESCGIHETVYNSIMK 743
E+ R PE +F P +G++ GI E + SI++
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILE-IMRSILQ 624
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 88.6 bits (210), Expect = 9e-19
Identities = 43/134 (32%), Positives = 69/134 (51%)
Frame = +3
Query: 84 LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 263
+ +K I +G + NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 264 ETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 443
E+ PA Y+A Q + +ASG+ T ++D G S IY+G+ L +G
Sbjct: 123 ESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSGNA 182
Query: 444 LTDYLMKILTERGY 485
+ D L + L ++ +
Sbjct: 183 INDILAQTLRDKNF 196
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 87.8 bits (208), Expect = 2e-18
Identities = 71/268 (26%), Positives = 118/268 (44%), Gaps = 38/268 (14%)
Frame = +3
Query: 48 YVGDEAQSKRGILTLKYPIEH--GIITNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEA 215
++G+E + TL++ H G + +W +W N + P ++ +LLT+
Sbjct: 43 FLGNELANCNDFTTLQFRRAHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQP 102
Query: 216 PLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTG--------------IVLD 353
+ Q++FE F A A L + G T +V+D
Sbjct: 103 VFTMPSIEHNTIQLVFEEFQFDAYLPCTPAELIPWDHGSFTMNQEDAYTGQHGECVLVID 162
Query: 354 SGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKE 533
SG +H +P+ + A+ R+D+ G+ LT+YL ++++ R Y+ E IV +IKE
Sbjct: 163 SGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYNM--MEETYIVNEIKE 220
Query: 534 KLCYVALDFEQEMATA--AASTSLEKSYELPD------------------GQVITIGNER 653
+CYV+ +F+++M + LE Y LPD QV+ + NER
Sbjct: 221 SVCYVSQNFKEDMEICHEKPRSKLEICYALPDYSTGKHGYIVRDINQKIEQQVLNLSNER 280
Query: 654 FRCPEALFQPXXLGMESCGIHETVYNSI 737
F PE LF P + + GI E V S+
Sbjct: 281 FMIPELLFSPSDIEIREAGIPEAVMQSV 308
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 79.8 bits (188), Expect = 4e-16
Identities = 43/161 (26%), Positives = 80/161 (49%), Gaps = 2/161 (1%)
Frame = +3
Query: 15 GVMVGMGQKDSYVGDEAQSKRGI--LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPE 188
GV + ++ YV DE Q I + +K +GII +W+ W +L+V P
Sbjct: 41 GVRSDVTGRNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPT 100
Query: 189 EHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 368
E+ +++TE NP++ R+++ + FE + PA Y+ QAV +A+ ++T +++D G
Sbjct: 101 EYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDIGSDN 160
Query: 369 SHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 491
+ P+ +G + I + LAG L + ++ F
Sbjct: 161 ASVTPVVDGLIIRKGIFKQSLAGDFLNANIEQLFNTMNIEF 201
Score = 51.6 bits (118), Expect = 1e-07
Identities = 33/101 (32%), Positives = 46/101 (45%), Gaps = 9/101 (8%)
Frame = +3
Query: 486 SFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCP 665
S+ +R ++ + KE + V + A AS+ K +E PDG G ERFR
Sbjct: 243 SYEIFQKRRVIEEWKESVLDV---LDTPFDEAKASSRNPKPFEFPDGVTHKFGQERFRIS 299
Query: 666 EALFQPXXLGMESC---------GIHETVYNSIMKCDVDIR 761
E LF P S G+HE VY SI+ CD ++R
Sbjct: 300 EILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSELR 340
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 67.7 bits (158), Expect = 2e-12
Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 4/149 (2%)
Frame = +3
Query: 99 PIEHGIITNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 266
PI+ G + +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 267 TFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL 446
P +A + ++ LYA G G+V+D G + PI +G + A +L L GR +
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGRYM 231
Query: 447 TDYLMKILTERGYSFTTTAEREIVRDIKE 533
T +L +L E + ++ + DI E
Sbjct: 232 TQHLQNLLRESLPTLKSSGQYVSKEDITE 260
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 37.9 bits (84), Expect = 0.002
Identities = 28/146 (19%), Positives = 67/146 (45%), Gaps = 12/146 (8%)
Frame = +3
Query: 90 LKYPIEHGIITNWD---------DMEKIWHHTFYNELRVAPEE---HPVLLTEAPLNPKA 233
L YPI+ G+ D D+ +I+ ++ + L++ + + V+ L +
Sbjct: 198 LFYPIKSGVFNESDYASSQQLLADIYEIFKYSITSLLQIPVSQLSQYSVIFIVPDLYDRV 257
Query: 234 NREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHA 413
EK+ I+F + + +++ + + +G + V+D G + + EG +P++
Sbjct: 258 YVEKILDILFFDLHFGKAAIVQESLCTSFGAGMSAACVVDMGAQKTSISCVEEGVVVPNS 317
Query: 414 ILRLDLAGRDLTDYLMKILTERGYSF 491
++++ G D+T MK+L + +
Sbjct: 318 RIKINYGGDDITLLFMKLLMRSHFPY 343
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 30.3 bits (65), Expect = 0.33
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +3
Query: 159 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNSPAM---YVAIQ 302
+Y L E+HP+LLT+ A L P+ + ++ +I ++ N+P + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC1296.04 |mug65||spore wall assembly protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 26.6 bits (56), Expect = 4.1
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +1
Query: 385 STKVTLCPTPSSVWTW 432
STK CP PS W W
Sbjct: 52 STKTATCPDPSWEWAW 67
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 201 LLTEAPLNPKANREKMTQIMFETFN 275
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,878,672
Number of Sequences: 5004
Number of extensions: 54835
Number of successful extensions: 199
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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