Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31140
(453 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 279 1e-76
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 146 1e-36
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 137 6e-34
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 108 3e-25
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 81 6e-17
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 75 5e-15
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 69 3e-13
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 61 9e-11
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 40 2e-04
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 27 1.3
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc... 25 4.1
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 25 5.4
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 25 7.2
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo... 25 7.2
SPBC18E5.09c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 7.2
SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 7.2
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr... 24 9.5
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 279 bits (685), Expect = 1e-76
Identities = 130/150 (86%), Positives = 139/150 (92%)
Frame = +3
Query: 3 DIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGME 182
DIKEKLCYVALDFEQE+ TAA S+SLEKSYELPDGQVITIGNERFR PEALFQPS LG+E
Sbjct: 211 DIKEKLCYVALDFEQELQTAAQSSSLEKSYELPDGQVITIGNERFRAPEALFQPSALGLE 270
Query: 183 SCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKII 362
+ GIHE YNSIMKCDVDIRKDLY N VMSGGTTMYPGIADRMQKEI ALAPS++K+KI+
Sbjct: 271 NAGIHEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIV 330
Query: 363 APPERKYSVWIGGSILAXLSTFQQMWISKE 452
APPERKYSVWIGGSILA LSTFQQMWISK+
Sbjct: 331 APPERKYSVWIGGSILASLSTFQQMWISKQ 360
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 146 bits (354), Expect = 1e-36
Identities = 66/150 (44%), Positives = 97/150 (64%)
Frame = +3
Query: 3 DIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGME 182
+IKEK CYVA DF E+ + +Y+LPD Q IT+G E F PE LF P +G E
Sbjct: 216 EIKEKCCYVASDFRSEIESWTEHKPQIHTYQLPDNQTITLGTECFSAPEVLFNPEMMGSE 275
Query: 183 SCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKII 362
+ G+H ++ SI+ D+D+R LY+N V+SGG+T+ G +R E+ A++ ++KI
Sbjct: 276 ASGLHIQLFKSILLSDIDLRSTLYSNIVLSGGSTLLRGFGERFISELRAISGKKNQVKIY 335
Query: 363 APPERKYSVWIGGSILAXLSTFQQMWISKE 452
A PER ++ W+GGSILA LSTF+++ I+ E
Sbjct: 336 ASPERMHNAWLGGSILASLSTFRRLLITSE 365
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 137 bits (332), Expect = 6e-34
Identities = 69/161 (42%), Positives = 105/161 (65%), Gaps = 12/161 (7%)
Frame = +3
Query: 3 DIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGME 182
++KEKLCYV+ D E + + +T L ++Y LPDG+VI +G+ER+ CPE LFQP +G E
Sbjct: 211 EMKEKLCYVSYDLELDHKLSEETTVLMRNYTLPDGRVIKVGSERYECPECLFQPHLVGSE 270
Query: 183 SCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITAL--------AP 338
G+ E ++++I DVDIRK LY V+SGG++MY G+ R++KEI L P
Sbjct: 271 QPGLSEFIFDTIQAADVDIRKYLYRAIVLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDP 330
Query: 339 STI---KIKIIAPPERKYSVWIGGSILA-XLSTFQQMWISK 449
+ + K+KI P R+++V+IGG++LA ++ MW+SK
Sbjct: 331 ARLPNFKVKIEDAPRRRHAVFIGGAVLADIMAQNDHMWVSK 371
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 108 bits (260), Expect = 3e-25
Identities = 59/142 (41%), Positives = 79/142 (55%), Gaps = 11/142 (7%)
Frame = +3
Query: 60 AAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESC---------GIHETVYN 212
A AS+ K +E PDG G ERFR E LF PSF S G+HE VY
Sbjct: 271 AKASSRNPKPFEFPDGVTHKFGQERFRISEILFNPSFSASRSAETTPPQGSVGLHELVYQ 330
Query: 213 SIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAP-STIKIKII-APPERKYS 386
SI+ CD ++R L N V++GGT++ PG+++R+Q E+ LA S I + +
Sbjct: 331 SILACDSELRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNA 390
Query: 387 VWIGGSILAXLSTFQQMWISKE 452
VW GGSILA L FQ +W+SK+
Sbjct: 391 VWFGGSILASLDNFQHLWVSKQ 412
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 81.4 bits (192), Expect = 6e-17
Identities = 40/91 (43%), Positives = 59/91 (64%), Gaps = 3/91 (3%)
Frame = +3
Query: 189 GIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAP 368
GI + N I +CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384
Query: 369 ---PERKYSVWIGGSILAXLSTFQQMWISKE 452
ER Y+ W+GGSIL+ L TF Q+WIS++
Sbjct: 385 GHVVERSYASWLGGSILSSLGTFHQLWISRQ 415
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 74.9 bits (176), Expect = 5e-15
Identities = 46/144 (31%), Positives = 70/144 (48%), Gaps = 20/144 (13%)
Frame = +3
Query: 3 DIKEKLCYVALDFEQEMATAAAS--TSLEKSYELPD------------------GQVITI 122
+IKE +CYV+ +F+++M + LE Y LPD QV+ +
Sbjct: 217 EIKESVCYVSQNFKEDMEICHEKPRSKLEICYALPDYSTGKHGYIVRDINQKIEQQVLNL 276
Query: 123 GNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIA 302
NERF PE LF PS + + GI E V S+ +I+ L N V GG +PG
Sbjct: 277 SNERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCKFPGFH 336
Query: 303 DRMQKEITALAPSTIKIKIIAPPE 374
R+ E+ +LAP+ ++K+ P +
Sbjct: 337 KRLSSELRSLAPANWEVKVFEPSD 360
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 68.9 bits (161), Expect = 3e-13
Identities = 47/160 (29%), Positives = 74/160 (46%), Gaps = 19/160 (11%)
Frame = +3
Query: 6 IKEKLCYVALDFEQEMATAAASTS--LEKSYELPDGQVITI--GNERFRCPEALFQPSFL 173
IKE+ CYV D +E + L+ + E G TI G ERF PE F P
Sbjct: 240 IKEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIA 299
Query: 174 GMESCG-IHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTI- 347
+ + E V N + +D+RK LY N V+SGG+T++ +R+Q+++ + I
Sbjct: 300 SSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIH 359
Query: 348 -------------KIKIIAPPERKYSVWIGGSILAXLSTF 428
+ +I+ ++ +VW GGS+LA F
Sbjct: 360 RSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEF 399
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 60.9 bits (141), Expect = 9e-11
Identities = 27/108 (25%), Positives = 57/108 (52%)
Frame = +3
Query: 129 ERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADR 308
E+ R PE +F PS +G++ GI E + + + + ++ ++ L +N +++GG PG+ R
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETR 653
Query: 309 MQKEITALAPSTIKIKIIAPPERKYSVWIGGSILAXLSTFQQMWISKE 452
+++E+T++ P I + W G S + F+ +++E
Sbjct: 654 IKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTRE 701
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 39.5 bits (88), Expect = 2e-04
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Frame = +3
Query: 243 KDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPP---ERKYSVWIGGSILA 413
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 414 XLSTFQQMWI 443
+ ++WI
Sbjct: 587 RIRIVSELWI 596
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 27.1 bits (57), Expect = 1.3
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 315 KEITALAPSTIKIKIIAPPERKYSVWIGGSILAXLST 425
KEI++ A S I + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPBC16A3.08c |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 25.4 bits (53), Expect = 4.1
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +2
Query: 194 PRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGD 322
PR+ V R+R P P + R V PR RRQ +G+
Sbjct: 41 PRELVAQSTTSRKRDPNQPTPRERTVNKKADQPRRRRQAPQGN 83
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 25.0 bits (52), Expect = 5.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 341 DHQDQDHRSPREEVLRMDRWIHPG 412
D D+ R+ E VLRM R++ PG
Sbjct: 499 DIDDKKDRALSEHVLRMHRYLPPG 522
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 24.6 bits (51), Expect = 7.2
Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 1/93 (1%)
Frame = +3
Query: 111 VITIGNERFRCPEALFQPSFLGMESC-GIHETVYNSIMKCDVDIRKDLYANTVMSGGTTM 287
++T+ NE + E L S S E+ + CD+D ++ + + T +
Sbjct: 136 LVTLPNENNQVIEPLSSQSCKSQLSTQNYSESDFGWNQLCDLD---PIFKSLAFTDDTNL 192
Query: 288 YPGIADRMQKEITALAPSTIKIKIIAPPERKYS 386
+P AD I ++K A RKYS
Sbjct: 193 FPAFADSEAALIMLKKREMTRVKHRAGRPRKYS 225
>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 24.6 bits (51), Expect = 7.2
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -3
Query: 382 YFLSGGAMILILMVEGARAVISFCILSAIPGY 287
Y +SGGA + +A +S CI +PGY
Sbjct: 412 YCISGGAAL----AASTQAFLSSCICPVLPGY 439
>SPBC18E5.09c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 128
Score = 24.6 bits (51), Expect = 7.2
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +3
Query: 21 CYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNE-RFRCP 146
CYV+ +E + + SL SY +PD + I + R+ P
Sbjct: 39 CYVSRPLTKERSCSHPYISLGSSYGIPDAENIEYPRDARYHSP 81
>SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 24.6 bits (51), Expect = 7.2
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +3
Query: 6 IKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQV 113
IKEKL VA EQE A +SL+ S + G V
Sbjct: 111 IKEKLRRVANITEQEQQCIPAESSLDLSIQAMKGVV 146
>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 703
Score = 24.2 bits (50), Expect = 9.5
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 237 IRKDLYANTVMSGGTTMYPGIADRMQKEI 323
I LY++ S T + GI DR++K +
Sbjct: 533 IYSSLYSSLNSSNSTVSFSGIFDRVEKSV 561
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,584,176
Number of Sequences: 5004
Number of extensions: 29548
Number of successful extensions: 112
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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