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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31138
         (784 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual     110   2e-25
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    67   3e-12
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    49   7e-07
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    31   0.14 
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-...    31   0.19 
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    30   0.33 
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce...    28   1.3  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.3  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    27   3.0  
SPAC56F8.13 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        27   4.0  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   4.0  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    26   5.3  
SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual          26   7.0  
SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual        25   9.3  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    25   9.3  
SPCC2H8.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   9.3  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    25   9.3  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   9.3  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    25   9.3  
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c...    25   9.3  

>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score =  110 bits (265), Expect = 2e-25
 Identities = 51/171 (29%), Positives = 85/171 (49%), Gaps = 2/171 (1%)
 Frame = +1

Query: 94  CNSCDKVIQ-GRIVTALNKKWHPEHFVCNTCRKPIDGAKFHQHNNGVHCVPCFTKHHSPR 270
           C+SC   ++ GRI++A  KK HP+ F C+TC + ++   F+      +C   + +  SPR
Sbjct: 258 CHSCGGSLRAGRIISASGKKLHPQCFKCDTCSQNLEHVGFYYREGKFYCHLDYHEQFSPR 317

Query: 271 CHGCGDPITDRVIQALGVSWHA-HHFVXXXXXXXXXXXXFMEQAGRPYCSDCYADKFATR 447
           C  C  PI D+ +      +H  HHF              + +    +C  CY +K+A +
Sbjct: 318 CKHCKTPIEDQAVHINNDWFHENHHFCAGCSEVFNVNIPCIYRDDLYWCQTCYDNKYAVK 377

Query: 448 CKGCGNPIVDKAIIALDAKWHRDCFTCMKCRNPVTDSTFSVMENQPLCGKC 600
           CK C  PI+  ++   D ++H  C+TC  C   + D  + ++EN P+C  C
Sbjct: 378 CKKCRKPILGISVKGSDGEYHSQCWTCGACNALLGDEGYFMIENTPICRPC 428


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 66.9 bits (156), Expect = 3e-12
 Identities = 45/167 (26%), Positives = 66/167 (39%), Gaps = 10/167 (5%)
 Frame = +1

Query: 73  KVEAPAVCNSCDKVIQGRIVTALNKKWHPEHFVCNTCRKPIDGAKFHQHNNGVH-----C 237
           KV +  +C SC +VI G+ V AL   +H E F C+ C   +    F   +  ++     C
Sbjct: 109 KVSSSKICASCGQVISGQYVRALGNIYHLECFRCHDCNSLVASKFFPIDDPTLNKQVPLC 168

Query: 238 VPCFTKHHSPRCHGCGDPITDRVIQALGVSWHAHHFV-XXXXXXXXXXXXFMEQAGRPYC 414
              + +     C  CG  +    I AL   +H  HF              + E  G+ YC
Sbjct: 169 ETDYFRRLDLLCASCGMALRGYYITALNKKFHIEHFTCSLCYTVFGPNDSYYEYEGKVYC 228

Query: 415 SDCYADKFATRCKGCGNPIVDKAI----IALDAKWHRDCFTCMKCRN 543
              Y+  FA RC GC  PI+ + +      +   WH  C    K  N
Sbjct: 229 HYHYSTLFAARCCGCDGPILRQFVEVYRNGVSQNWHVPCHMIYKFWN 275



 Score = 32.3 bits (70), Expect = 0.081
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 448 CKGCGNPIVDKAIIALDAKWHRDCFTCMKCRNPVTDSTFSV 570
           C  CG  I  + + AL   +H +CF C  C + V    F +
Sbjct: 116 CASCGQVISGQYVRALGNIYHLECFRCHDCNSLVASKFFPI 156


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 49.2 bits (112), Expect = 7e-07
 Identities = 24/67 (35%), Positives = 30/67 (44%)
 Frame = +1

Query: 400 GRPYCSDCYADKFATRCKGCGNPIVDKAIIALDAKWHRDCFTCMKCRNPVTDSTFSVMEN 579
           GRP CS C     A  C  C   I D A+++    +HR+CF C  CR  + DS F     
Sbjct: 67  GRPVCSSC-----AHTCTACRMRIKDYALMSGYDSYHRECFRCHDCRKQIIDSNFKRDNR 121

Query: 580 QPLCGKC 600
              C  C
Sbjct: 122 TIFCNDC 128



 Score = 35.9 bits (79), Expect = 0.007
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +1

Query: 94  CNSCDKVIQGRIVTALNKKWHPEHFVCNTCRKPIDGAKFHQHNNGVHCVPCFTKHHSPR 270
           C +C   I+   + +    +H E F C+ CRK I  + F + N  + C  C    H  R
Sbjct: 78  CTACRMRIKDYALMSGYDSYHRECFRCHDCRKQIIDSNFKRDNRTIFCNDCKQVRHPSR 136



 Score = 35.5 bits (78), Expect = 0.009
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
 Frame = +1

Query: 427 ADKFATRCKGCGNPIVDKAI-IALDAK-WHRDCFTCMKCRNPVTDS---TFSVMENQPLC 591
           + K +T C  CG     +   I+     WH+DCF C KC   +  S        + +P+C
Sbjct: 12  SSKGSTVCFRCGQAFQRRETPISFGGHMWHKDCFCCTKCDKGLEHSDQMLVQTSDGRPVC 71

Query: 592 GKCA 603
             CA
Sbjct: 72  SSCA 75



 Score = 28.7 bits (61), Expect = 0.99
 Identities = 25/121 (20%), Positives = 40/121 (33%), Gaps = 2/121 (1%)
 Frame = +1

Query: 67  STKVEAPAVCNSCDKVIQGRI--VTALNKKWHPEHFVCNTCRKPIDGAKFHQHNNGVHCV 240
           S   +   VC  C +  Q R   ++     WH + F C  C K ++ +            
Sbjct: 10  SPSSKGSTVCFRCGQAFQRRETPISFGGHMWHKDCFCCTKCDKGLEHSDQMLVQTSDGRP 69

Query: 241 PCFTKHHSPRCHGCGDPITDRVIQALGVSWHAHHFVXXXXXXXXXXXXFMEQAGRPYCSD 420
            C +  H+  C  C   I D  + +   S+H   F             F       +C+D
Sbjct: 70  VCSSCAHT--CTACRMRIKDYALMSGYDSYHRECFRCHDCRKQIIDSNFKRDNRTIFCND 127

Query: 421 C 423
           C
Sbjct: 128 C 128


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 32/124 (25%), Positives = 45/124 (36%), Gaps = 4/124 (3%)
 Frame = +1

Query: 64  MSTKVEAPAVCNSC-DKVIQGRIVTALNKKWHPEHFVCNTCRKPIDGAK--FHQHN-NGV 231
           + T  E    C  C + V     V    K WH + F C  C K +D +   F Q +   +
Sbjct: 14  LETPSERTCFCIKCWESVPSTSQVWFGGKCWHSDCFKCVNCNKKLDPSSEDFSQDDQKQI 73

Query: 232 HCVPCFTKHHSPRCHGCGDPITDRVIQALGVSWHAHHFVXXXXXXXXXXXXFMEQAGRPY 411
            C  C        C+GC  PI +    A+  S  A+H              F +  G+ Y
Sbjct: 74  FCKLCV-----DICNGCSTPICE--FNAVSNS-QANHPCCSNCRAFINSNAFGKFKGQHY 125

Query: 412 CSDC 423
           C  C
Sbjct: 126 CLPC 129



 Score = 29.5 bits (63), Expect = 0.57
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = +1

Query: 91  VCNSCDKVIQGRIVTALNKKWHPEHFVCNTCRKPIDGAKFHQHNNGVHCVPCFTK 255
           +CN C   I      + ++  HP    C+ CR  I+   F +     +C+PC  K
Sbjct: 81  ICNGCSTPICEFNAVSNSQANHP---CCSNCRAFINSNAFGKFKGQHYCLPCLRK 132



 Score = 28.7 bits (61), Expect = 0.99
 Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
 Frame = +1

Query: 448 CKGCGNPIVDKAIIALDAK-WHRDCFTCMKCRNPVTDST 561
           C  C   +   + +    K WH DCF C+ C   +  S+
Sbjct: 24  CIKCWESVPSTSQVWFGGKCWHSDCFKCVNCNKKLDPSS 62


>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
           cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +1

Query: 214 QHNNGVHCVPCFTKHHSPRCHGCGDPITDRVIQALGVSWHAHHFV 348
           Q+ + +   PC + H+ P C  C D + ++ I     +W AH  V
Sbjct: 382 QYGSKIEDTPC-SLHNVPGCFSCFDRLGEKNITETNSNWFAHRLV 425


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 25/93 (26%), Positives = 45/93 (48%)
 Frame = +2

Query: 245  ASPNITARGAMDAATPSLTV*SKLLACRGTLTTSSAVDARRSLAVEGSWNRLAVPIAPTA 424
            +S  IT+   ++++TP  +  S  L     +T+SS +++   +      N      + TA
Sbjct: 3368 SSTPITSSTVVNSSTPITS--STALNTSTPITSSSVLNSSTPITSSTVVNSSTPITSSTA 3425

Query: 425  TQTSSPLAARGAEIQSSIKPSSRLMLSGTAIAS 523
              TS+P+ +      S+   SS ++ S TAIAS
Sbjct: 3426 LNTSTPITSSTVVNSSTPITSSSVLNSSTAIAS 3458



 Score = 29.1 bits (62), Expect = 0.75
 Identities = 23/93 (24%), Positives = 46/93 (49%)
 Frame = +2

Query: 245 ASPNITARGAMDAATPSLTV*SKLLACRGTLTTSSAVDARRSLAVEGSWNRLAVPIAPTA 424
           +S  IT+  A++ +TP  +  S +L     +T+SS +++   +    + N      + + 
Sbjct: 620 SSTPITSSTALNTSTPITS--SSVLNSSTPITSSSVLNSSTPITSSTALNTSTPITSSSV 677

Query: 425 TQTSSPLAARGAEIQSSIKPSSRLMLSGTAIAS 523
             +S+P+ +  A   S+   SS ++ S TAI S
Sbjct: 678 LNSSTPITSSTALNTSTPITSSSVLNSSTAITS 710



 Score = 27.9 bits (59), Expect = 1.7
 Identities = 22/93 (23%), Positives = 44/93 (47%)
 Frame = +2

Query: 245  ASPNITARGAMDAATPSLTV*SKLLACRGTLTTSSAVDARRSLAVEGSWNRLAVPIAPTA 424
            +S  IT+   ++++TP  +  S +L     +T+SS +++   +      N      + T 
Sbjct: 3092 SSTAITSSSIVNSSTPITS--SSVLNSSTAITSSSILNSSTPITSSSILNSSTPITSSTV 3149

Query: 425  TQTSSPLAARGAEIQSSIKPSSRLMLSGTAIAS 523
              +S+P+ +      S+   SS ++ S TAI S
Sbjct: 3150 VNSSTPITSSTTLNTSTPITSSSVLNSSTAITS 3182



 Score = 25.8 bits (54), Expect = 7.0
 Identities = 21/93 (22%), Positives = 44/93 (47%)
 Frame = +2

Query: 245  ASPNITARGAMDAATPSLTV*SKLLACRGTLTTSSAVDARRSLAVEGSWNRLAVPIAPTA 424
            +S  IT+   ++++TP  +  S ++     +T+SS +++   +      N      + T 
Sbjct: 3236 SSTPITSSSVLNSSTPITS--STVVNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTV 3293

Query: 425  TQTSSPLAARGAEIQSSIKPSSRLMLSGTAIAS 523
              +S+P+ +      S+   SS ++ S TAI S
Sbjct: 3294 VNSSTPITSSTTLNTSTPITSSSVLNSSTAITS 3326



 Score = 25.4 bits (53), Expect = 9.3
 Identities = 20/93 (21%), Positives = 44/93 (47%)
 Frame = +2

Query: 245  ASPNITARGAMDAATPSLTV*SKLLACRGTLTTSSAVDARRSLAVEGSWNRLAVPIAPTA 424
            +S  IT+   ++ +TP  +  S +L     +T+S+ +++   +    + N      + + 
Sbjct: 932  SSTPITSSTGLNTSTPITS--SSVLNSSTPITSSTVLNSSTPITSSTALNTSTPITSSSV 989

Query: 425  TQTSSPLAARGAEIQSSIKPSSRLMLSGTAIAS 523
              +S+P+ +      S+   SS ++ S TAI S
Sbjct: 990  LNSSTPITSSSVLNTSTPITSSSVLNSSTAITS 1022


>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/55 (27%), Positives = 23/55 (41%)
 Frame = -2

Query: 585 WLVFHHGECRIGHWIPALHAREAIAVPLSIKRDDGFIDDWISAPLAASGELVCVA 421
           W V    + R  HW        A+A  ++I    GF+  W +  + A G + C A
Sbjct: 271 WCVIDFAKNR--HWSVVGFCEGAVAGLVAITPGSGFVPPWAAVVIGALGAVFCYA 323


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 7/30 (23%)
 Frame = +3

Query: 300  PCDPSS----W---RVVARSPLRLRWMQEG 368
            P DPS     W   R+VA S +RLRW+++G
Sbjct: 1272 PIDPSEKLGFWDKIRLVAHSQIRLRWLEDG 1301


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/54 (22%), Positives = 24/54 (44%)
 Frame = +1

Query: 106  DKVIQGRIVTALNKKWHPEHFVCNTCRKPIDGAKFHQHNNGVHCVPCFTKHHSP 267
            D +  G  + + +K +HP+ +  +TCRK I   +       +       +H+ P
Sbjct: 2536 DTIPLGEYLDSAHKVYHPKEWSLSTCRKLIAEKQMEDLETRLKVYDLVCRHYRP 2589


>SPAC56F8.13 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 101

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 12 TQHNTKVKKYKNNHRHNHVN 71
          TQ     KK KN + HNHVN
Sbjct: 4  TQKKKNEKKTKNPYSHNHVN 23


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 19/92 (20%), Positives = 40/92 (43%)
 Frame = +2

Query: 248 SPNITARGAMDAATPSLTV*SKLLACRGTLTTSSAVDARRSLAVEGSWNRLAVPIAPTAT 427
           S ++ +     ++  S ++ S  LA     ++S A  +  S ++  S         PT++
Sbjct: 116 SSSLASSSTTSSSLASSSITSSSLASSSITSSSLASSSTTSSSLASSSTNSTTSATPTSS 175

Query: 428 QTSSPLAARGAEIQSSIKPSSRLMLSGTAIAS 523
            TSS L++  A   ++    +   L+ T  A+
Sbjct: 176 ATSSSLSSTAASNSATSSSLASSSLNSTTSAT 207


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 269 GAMDAATPSLTV*SKLLACRGTLTTSSAVDARRSLAVEGSWNRL 400
           G    ++ + T+ +K   CRG +   S VDA    A+ G  N L
Sbjct: 636 GQKYGSSSTSTIIAKCPMCRGNIVQDSLVDATILQAIHGPLNSL 679


>SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +1

Query: 169 VCNTCRKPIDGAKFHQHNNGVHCVPCFTKH-HSPRCHGCGDPIT 297
           +C+TC+K     +  + ++   C+ C  +H    +C G  DP T
Sbjct: 8   ICSTCQKNASKYRCPRCDSRFCCLECNLEHKRLTKCSGERDPAT 51


>SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -2

Query: 612 DELSAFTAEWLVFHHGECRIGHWIPALHAREAIAVPLSIKRDDGFID 472
           +E  A  A   +F +G  R+G + P       + VP  + RD+ F D
Sbjct: 72  NEKMANEAGGKIFTYGSYRLGVYGPGSDIDTLVVVPKHVSRDNFFQD 118


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 11/47 (23%), Positives = 20/47 (42%)
 Frame = +1

Query: 523 TCMKCRNPVTDSTFSVMENQPLCGKCA*FITNI*IKSPIEMYSNTFR 663
           TC  C+   T       + QPLC  C  F+    +  P+ + ++  +
Sbjct: 634 TCTNCQTRTTPLWRRSPDGQPLCNACGLFMKINGVVRPLSLKTDVIK 680


>SPCC2H8.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 266

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 9   ITQHNTKVKKYKNNHRHNHVNKG 77
           IT+ +TK KK K+N   N+V  G
Sbjct: 110 ITKPHTKTKKLKSNSIFNYVRNG 132


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = +3

Query: 12  TQHNTKVKKYKNNHRHNHVNK 74
           T  N++   +++NH H+H++K
Sbjct: 533 THENSQEHHHEHNHNHDHIHK 553


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 338 TTSSAVDARRSLAVEGSWNRLAVPIAPTATQTSS 439
           TTS++     S+   G  + L+ PI PT   TS+
Sbjct: 167 TTSTSCTTSTSIPPTGGSSSLSTPITPTVPPTST 200


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 26  ESKKI*KQSPAQSCQQRLKPPPSVTA 103
           E+ K+    PA+S +Q L P PS+T+
Sbjct: 904 ETPKVISARPAESVKQPLTPVPSMTS 929


>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 399 SLFHEPSTAKLLLASTADEVVSVPRHAKSLDHTVS 295
           S FH+PS+  L     AD   SVP  ++S +   S
Sbjct: 32  SYFHKPSSTGLFATLVADTNSSVPSASRSPESIAS 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,088,574
Number of Sequences: 5004
Number of extensions: 61978
Number of successful extensions: 217
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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