Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31138
         (784 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.4  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    22   5.6  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    22   5.6  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   7.4  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   9.8  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   9.8  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 419 TATQTSSPLAARGAEIQSSIKPSSRLMLSGTAIAS 523
           T   + + L   GA++ + +   +RL LSG AIAS
Sbjct: 387 TLELSDNKLRTVGAQLFNGLFVLNRLTLSGNAIAS 421


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 444 SGELVCVAVGAIGTAS 397
           +GE VC A  A GTAS
Sbjct: 653 AGEYVCTAENAAGTAS 668


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 300 PCDPSSWRVVARSPLRLR 353
           PCDP   R+ + +PL LR
Sbjct: 60  PCDPVGRRLKSLAPLVLR 77


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 300 PCDPSSWRVVARSPLRLR 353
           PCDP   R+ + +PL LR
Sbjct: 60  PCDPVGRRLKSLAPLVLR 77


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +3

Query: 351 RWMQEGAWRW 380
           RW+Q+GA+ W
Sbjct: 171 RWVQQGAFGW 180


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -2

Query: 582 LVFHHGECRIGHWIPALHAREAIAVPLSIKRDDG 481
           +V+  GE  +   +PA+ +R  I +   +KR+ G
Sbjct: 365 VVYRPGENPVTQRLPAVLSRIGIILASPLKREGG 398


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 12  TQHNTKVKKYKNNHRHNHVN 71
           T HN    KY  N+++N+ N
Sbjct: 89  TIHNNNNYKYNYNNKYNYNN 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,833
Number of Sequences: 438
Number of extensions: 4195
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)