Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31138
(784 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g19270.1 68414.m02397 ubiquitin interaction motif-containing ... 51 8e-07
At5g17890.1 68418.m02098 LIM domain-containing protein / disease... 48 5e-06
At4g36860.1 68417.m05226 LIM domain-containing protein low simil... 48 9e-06
At5g66610.1 68418.m08396 LIM domain-containing protein contains ... 47 1e-05
At5g66620.1 68418.m08397 LIM domain-containing protein contains ... 38 0.008
At3g55770.1 68416.m06197 LIM domain-containing protein similar t... 36 0.040
At2g45800.1 68415.m05696 LIM domain-containing protein similar t... 36 0.040
At2g39900.1 68415.m04904 LIM domain-containing protein similar t... 35 0.070
At5g66630.1 68418.m08398 LIM domain-containing protein contains ... 33 0.16
At3g61230.1 68416.m06852 LIM domain-containing protein similar t... 32 0.49
At2g37810.1 68415.m04642 CHP-rich zinc finger protein, putative 32 0.49
At1g53450.2 68414.m06059 expressed protein 30 1.5
At1g53450.1 68414.m06058 expressed protein 30 1.5
At1g10200.1 68414.m01150 transcription factor LIM, putative stro... 30 1.5
At1g01780.1 68414.m00097 LIM domain-containing protein similar t... 30 1.5
At5g60250.1 68418.m07552 zinc finger (C3HC4-type RING finger) fa... 29 2.6
At2g32450.1 68415.m03964 calcium-binding EF hand family protein ... 29 4.6
At2g07630.1 68415.m00881 hypothetical protein 28 6.1
At2g02700.1 68415.m00210 DC1 domain-containing protein contains ... 28 6.1
At5g52950.1 68418.m06570 expressed protein ; expression supporte... 28 8.0
At5g24740.1 68418.m02920 expressed protein 28 8.0
At2g39830.1 68415.m04892 LIM domain-containing protein contains ... 28 8.0
>At1g19270.1 68414.m02397 ubiquitin interaction motif-containing
protein / LIM domain-containing protein weak similarity
to LIM-homeobox protein [Mus musculus] GI:2149584, Hic-5
[Mus musculus] GI:664955; contains Pfam profiles
PF02809: Ubiquitin interaction motif, PF00412: LIM
domain
Length = 532
Score = 51.2 bits (117), Expect = 8e-07
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Frame = +1
Query: 91 VCNSCDKVI-QGRIVTALNKKWHPEHFVCNTCRKPIDGAKFHQHNNGVHCVPCFTKHHSP 267
+C C+ I GR + LN WHPE F C C +PI +F N C+ + + P
Sbjct: 171 ICAGCNMEIGHGRFLNCLNSLWHPECFRCYGCSQPISEYEFSTSGNYPFHKACYRERYHP 230
Query: 268 RCHGCGDPITDRVIQALGVSWHAHHF 345
+C C I A + + AH F
Sbjct: 231 KCDVCSHFIPTN--HAGLIEYRAHPF 254
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +1
Query: 448 CKGCGNPIVDKAII-ALDAKWHRDCFTCMKCRNPVTDSTFSVMENQPLCGKC 600
C GC I + L++ WH +CF C C P+++ FS N P C
Sbjct: 172 CAGCNMEIGHGRFLNCLNSLWHPECFRCYGCSQPISEYEFSTSGNYPFHKAC 223
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/66 (22%), Positives = 22/66 (33%), Gaps = 1/66 (1%)
Frame = +1
Query: 271 CHGCGDPITD-RVIQALGVSWHAHHFVXXXXXXXXXXXXFMEQAGRPYCSDCYADKFATR 447
C GC I R + L WH F F P+ CY +++ +
Sbjct: 172 CAGCNMEIGHGRFLNCLNSLWHPECFRCYGCSQPISEYEFSTSGNYPFHKACYRERYHPK 231
Query: 448 CKGCGN 465
C C +
Sbjct: 232 CDVCSH 237
>At5g17890.1 68418.m02098 LIM domain-containing protein / disease
resistance protein-related low similarity to disease
resistance protein RPP4 [Arabidopsis thaliana]
GI:20270890; contains Pfam profiles PF00412: LIM domain,
PF00931: NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1613
Score = 48.4 bits (110), Expect = 5e-06
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Frame = +1
Query: 94 CNSCDKVIQGRI-VTALNKKWHPEHFVCNTCRKPIDGAKFHQHNNGVHCVPCFTKHHSPR 270
C C I+ I + A WHP+ F C CR+PI + G++ PC+ + P
Sbjct: 1240 CKDCKSAIEDGISINAYGSVWHPQCFCCLRCREPIAMNEI-SDLRGMYHKPCYKELRHPN 1298
Query: 271 CHGCGDPITDRVIQALGVSWHAHHF 345
C+ C I A G+ +H H F
Sbjct: 1299 CYVCEKKIPR---TAEGLKYHEHPF 1320
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 442 TRCKGCGNPIVDK-AIIALDAKWHRDCFTCMKCRNPVTDSTFS 567
++CK C + I D +I A + WH CF C++CR P+ + S
Sbjct: 1238 SKCKDCKSAIEDGISINAYGSVWHPQCFCCLRCREPIAMNEIS 1280
>At4g36860.1 68417.m05226 LIM domain-containing protein low
similarity to LIM-domain protein [Branchiostoma
floridae] GI:3360516, DRAL/Slim3/FHL2 [Homo sapiens]
GI:7209525; contains Pfam profile PF00412: LIM domain
Length = 351
Score = 47.6 bits (108), Expect = 9e-06
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +1
Query: 151 WHPEHFVCNTCRKPIDGAKFHQHNNGVHCVPCFTKHHSPRCHGC 282
WHPE F CN C KPI +F N + C+ + H P+C C
Sbjct: 5 WHPECFCCNACDKPIIDYEFSMSGNRPYHKLCYKEQHHPKCDVC 48
Score = 36.7 bits (81), Expect = 0.017
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 505 WHRDCFTCMKCRNPVTDSTFSVMENQPLCGKC 600
WH +CF C C P+ D FS+ N+P C
Sbjct: 5 WHPECFCCNACDKPIIDYEFSMSGNRPYHKLC 36
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/50 (26%), Positives = 17/50 (34%)
Frame = +1
Query: 316 LGVSWHAHHFVXXXXXXXXXXXXFMEQAGRPYCSDCYADKFATRCKGCGN 465
+G WH F F RPY CY ++ +C C N
Sbjct: 1 MGGVWHPECFCCNACDKPIIDYEFSMSGNRPYHKLCYKEQHHPKCDVCHN 50
>At5g66610.1 68418.m08396 LIM domain-containing protein contains
Pfam profile PF00412: LIM domain
Length = 529
Score = 47.2 bits (107), Expect = 1e-05
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +1
Query: 88 AVCNSCDKVIQ-GRIVTALNKKWHPEHFVCNTCRKPIDGAKFHQHN--NGVHCVPCFTKH 258
++C+ C I+ GR V AL WHPE F C C KPI ++ +H +C P
Sbjct: 199 SICDGCKSAIEYGRSVHALGVNWHPECFCCRYCDKPIAMHEYKEHPFWKEKYC-PFHEVD 257
Query: 259 HSPRCHGC 282
+P+C C
Sbjct: 258 GTPKCCSC 265
Score = 35.5 bits (78), Expect = 0.040
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 448 CKGCGNPI-VDKAIIALDAKWHRDCFTCMKCRNPV 549
C GC + I +++ AL WH +CF C C P+
Sbjct: 201 CDGCKSAIEYGRSVHALGVNWHPECFCCRYCDKPI 235
Score = 33.5 bits (73), Expect = 0.16
Identities = 27/99 (27%), Positives = 35/99 (35%), Gaps = 5/99 (5%)
Frame = +1
Query: 256 HHSPRCHGCGDPIT-DRVIQALGVSWHAHHFVXXXXXXXXXXXXFMEQA--GRPYCSDCY 426
H C GC I R + ALGV+WH F + E YC
Sbjct: 196 HPHSICDGCKSAIEYGRSVHALGVNWHPECFCCRYCDKPIAMHEYKEHPFWKEKYCPFHE 255
Query: 427 ADKFATRCKGCG--NPIVDKAIIALDAKWHRDCFTCMKC 537
D +C C P K ++ D +W C CM+C
Sbjct: 256 VDG-TPKCCSCERLEPWGTKYVMLADNRWL--CVKCMEC 291
>At5g66620.1 68418.m08397 LIM domain-containing protein contains
Pfam profile PF00412: LIM domain
Length = 644
Score = 37.9 bits (84), Expect = 0.008
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 85 PAVCNSCDKVIQ-GRIVTALNKKWHPEHFVCNTCRKPI 195
P++C C+ ++ G V L WHP F C C KPI
Sbjct: 283 PSLCGGCNFAVEHGGSVNILGVLWHPGCFCCRACHKPI 320
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Frame = +1
Query: 448 CKGCGNPIVDKAII-ALDAKWHRDCFTCMKCRNPV 549
C GC + + L WH CF C C P+
Sbjct: 286 CGGCNFAVEHGGSVNILGVLWHPGCFCCRACHKPI 320
>At3g55770.1 68416.m06197 LIM domain-containing protein similar to
pollen specific LIM domain protein 1b [Nicotiana
tabacum] GI:6467905, PGPS/D1 [Petunia x hybrida]
GI:4105772; contains Pfam profile PF00412: LIM domain
Length = 199
Score = 35.5 bits (78), Expect = 0.040
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 445 RCKGCGNPIVDKAIIALDAK-WHRDCFTCMKCRNPVTDSTFSVMENQPLC 591
+CK C + +++ D +H+ CF C C++ + S++S ME C
Sbjct: 9 KCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYC 58
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/53 (20%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +1
Query: 94 CNSCDKVIQG-RIVTALNKKWHPEHFVCNTCRKPIDGAKFHQHNNGVHCVPCF 249
C +C+K + +++A +H F C C+ + + + ++C P F
Sbjct: 10 CKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKPHF 62
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/50 (20%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 445 RCKGCGNPIVDKAIIALDAK-WHRDCFTCMKCRNPVTDSTFSVMENQPLC 591
+C C + + ++++ +H+ CF C P++ S ++ +E C
Sbjct: 107 KCATCSKTVYPIEKVTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYC 156
>At2g45800.1 68415.m05696 LIM domain-containing protein similar to
PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
Pfam profile PF00412: LIM domain
Length = 226
Score = 35.5 bits (78), Expect = 0.040
Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 445 RCKGCGNPIVDKAIIALDAK-WHRDCFTCMKCRNPVTDSTFSVMENQPLC 591
+CK C + ++ L+ +H+ CF C C+ + S +S M+ C
Sbjct: 9 KCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYC 58
>At2g39900.1 68415.m04904 LIM domain-containing protein similar to
pollen specific LIM domain protein 1b [Nicotiana
tabacum] GI:6467905, PGPS/D1 [Petunia x hybrida]
GI:4105772; contains Pfam profile PF00412: LIM domain
Length = 200
Score = 34.7 bits (76), Expect = 0.070
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +1
Query: 445 RCKGCGNPIVDKAIIALDA-KWHRDCFTCMKCRNPVTDSTFSVMENQPLC 591
+C+ C + +++ D +H+ CF C C++ + S +S ME C
Sbjct: 9 KCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYC 58
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +1
Query: 94 CNSCDKVIQG-RIVTALNKKWHPEHFVCNTCRKPIDGAKFHQHNNGVHCVPCF 249
C +C+K + +++A +H F C+ C+ + + + V+C P F
Sbjct: 10 CRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRPHF 62
>At5g66630.1 68418.m08398 LIM domain-containing protein contains low
similarity to Pfam profile PF00412: LIM domain
Length = 702
Score = 33.5 bits (73), Expect = 0.16
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +1
Query: 88 AVCNSCDKVIQGR-IVTALNKKWHPEHFVCNTCRKPIDGAKFHQH 219
++C C+ ++ V L WHP F C +C KPI + H
Sbjct: 345 SMCGGCNSAVKHEESVNILGVLWHPGCFCCRSCDKPIAIHELENH 389
Score = 32.7 bits (71), Expect = 0.28
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +1
Query: 448 CKGCGNPIV-DKAIIALDAKWHRDCFTCMKCRNPV 549
C GC + + ++++ L WH CF C C P+
Sbjct: 347 CGGCNSAVKHEESVNILGVLWHPGCFCCRSCDKPI 381
>At3g61230.1 68416.m06852 LIM domain-containing protein similar to
SP|P29675 Pollen specific protein SF3 {Helianthus
annuus}; contains Pfam profile PF00412: LIM domain
Length = 213
Score = 31.9 bits (69), Expect = 0.49
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +1
Query: 445 RCKGCGNPIVDKAIIALDAK-WHRDCFTCMKCRNPVTDSTFSVMENQPLC 591
+CK C + ++ L+ +H+ CF C C + +S M+ C
Sbjct: 10 KCKACDKTVYVMDLMTLEGMPYHKSCFRCSHCNGTLVICNYSSMDGVLYC 59
Score = 28.3 bits (60), Expect = 6.1
Identities = 10/50 (20%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 445 RCKGCGNPIVDKAIIALDAK-WHRDCFTCMKCRNPVTDSTFSVMENQPLC 591
+C C + + ++ + +H+ CF C P+T S+++ ++ C
Sbjct: 106 KCAACKKTVYPLEKMTMEGESYHKTCFRCAHSGCPLTHSSYAALDGVLYC 155
>At2g37810.1 68415.m04642 CHP-rich zinc finger protein, putative
Length = 233
Score = 31.9 bits (69), Expect = 0.49
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 13/69 (18%)
Frame = +1
Query: 94 CNSCDKVIQGRIVTA---LNKKWHPEH----FV------CNTCRKPIDGAKFHQHNNGVH 234
C CD V+ T L HP+H FV CN C + ++G +H G
Sbjct: 45 CAPCDYVLHDHCATCPFTLISFMHPQHELRLFVNGSENMCNICHRLVEGVYYHCETCGFD 104
Query: 235 CVPCFTKHH 261
P T+HH
Sbjct: 105 VHPLCTQHH 113
>At1g53450.2 68414.m06059 expressed protein
Length = 453
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = -3
Query: 257 CLVKQGTQWTPLLCW*NLAPSIGLRQVLQTKCSG 156
C KQGT+ TP++ W + + ++G+ Q L + SG
Sbjct: 326 CKSKQGTRITPMINWPDKSLALGVSQALAWRRSG 359
>At1g53450.1 68414.m06058 expressed protein
Length = 453
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = -3
Query: 257 CLVKQGTQWTPLLCW*NLAPSIGLRQVLQTKCSG 156
C KQGT+ TP++ W + + ++G+ Q L + SG
Sbjct: 326 CKSKQGTRITPMINWPDKSLALGVSQALAWRRSG 359
>At1g10200.1 68414.m01150 transcription factor LIM, putative strong
similarity to transcription factor Ntlim1 [Nicotiana
tabacum] GI:5689136, LIM domain protein WLIM-1
[Helianthus annuus] GI:5070280; contains Pfam profile
PF00412: LIM domain
Length = 190
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +1
Query: 94 CNSCDKVIQ-GRIVTALNKKWHPEHFVCNTCRKPIDGAKFHQHNNGVHCVPCFTKH 258
C +CDK + +TA N+ +H F C+ C+ + + ++ ++C P F ++
Sbjct: 10 CMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQN 65
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +1
Query: 445 RCKGCGNPI--VDKAIIALDAKWHRDCFTCMKCRNPVTDSTFSVMENQPLC 591
+C C + VDK + A + +H+ CF C C+ + S ++ E C
Sbjct: 9 KCMACDKTVYLVDK-LTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYC 58
>At1g01780.1 68414.m00097 LIM domain-containing protein similar to
PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
Pfam profile PF00412: LIM domain
Length = 205
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/50 (22%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 445 RCKGCGNPIVDKAIIALDAK-WHRDCFTCMKCRNPVTDSTFSVMENQPLC 591
+C C + +++++ +H+ CF C C+ + S +S M+ C
Sbjct: 9 KCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYC 58
>At5g60250.1 68418.m07552 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature and Pfam domain
PF01485: IBR domain
Length = 655
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 448 CKGCGNPIVDKAIIALDAKWHRDCFTCMK 534
C C N IV + + ++D HR CF C+K
Sbjct: 301 CAICFNDIVAEGMFSVDKCRHRFCFQCVK 329
>At2g32450.1 68415.m03964 calcium-binding EF hand family protein low
similarity to O-linked GlcNAc transferase [Homo sapiens]
GI:2266994; contains Pfam profiles PF00036: EF hand,
PF00515: TPR Domain
Length = 802
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +1
Query: 169 VCNTCRKPIDGAKFHQHNNGVH-CVPCFTKHHSP 267
VC+ CR PI G++F + G C C+++ P
Sbjct: 730 VCSVCRYPIIGSRFKEVKTGFSLCNQCYSEGKIP 763
>At2g07630.1 68415.m00881 hypothetical protein
Length = 458
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/46 (30%), Positives = 19/46 (41%)
Frame = +1
Query: 484 IIALDAKWHRDCFTCMKCRNPVTDSTFSVMENQPLCGKCA*FITNI 621
I +D W C KC VT + ++ Q C C ITN+
Sbjct: 260 IYDIDRDWSWYYIVCKKCNKKVTKVVMTSLKAQLWCETCRAPITNV 305
>At2g02700.1 68415.m00210 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 499
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = +1
Query: 91 VCNSCDKVIQGRIVTALNKKWHPEHFVCNTCRKPIDGAKFHQHNNGVHCVPCFTK 255
VC CD ++ + A KK HP H PI+ H+ N+ C C K
Sbjct: 393 VCVKCDFILHEKCADAPRKKVHPLH------PHPIEQKVVHE-NHEFECAACMRK 440
>At5g52950.1 68418.m06570 expressed protein ; expression supported
by MPSS
Length = 945
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/53 (26%), Positives = 23/53 (43%)
Frame = -2
Query: 525 REAIAVPLSIKRDDGFIDDWISAPLAASGELVCVAVGAIGTASLFHEPSTAKL 367
RE + +S +G + I P S L+CV + ++ HE S K+
Sbjct: 424 REGFSALVSFSNSNGSLRTGILKPFTFSSALICVFDNGVSPQTVDHEDSRKKV 476
>At5g24740.1 68418.m02920 expressed protein
Length = 3306
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -3
Query: 248 KQGTQWTPL-LCW*NLAPSIGLRQVLQTKCSG 156
KQG P+ L W N+ IGL V+ T CSG
Sbjct: 3193 KQGFLGVPIDLVW-NIEREIGLESVIHTDCSG 3223
>At2g39830.1 68415.m04892 LIM domain-containing protein contains
Pfam profile PF00412: LIM domain
Length = 503
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Frame = +1
Query: 91 VCNSCDKVI-QGRIVTALNKKWHPEHFVCNTCRKPIDGAKFHQHNNGV---HCVPCFTKH 258
+C C+ I G + + +HPE F C++C I + ++ G+ C P + +
Sbjct: 161 ICGGCNSDIGSGNYLGCMGTFFHPECFRCHSCGYAITEHEIPTNDAGLIEYRCHPFWNQK 220
Query: 259 HSP 267
+ P
Sbjct: 221 YCP 223
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,778,243
Number of Sequences: 28952
Number of extensions: 355566
Number of successful extensions: 1112
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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