Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31135
(672 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF322227-1|AAK01654.1| 782|Tribolium castaneum cell surface pro... 25 0.43
EF592539-1|ABQ95985.1| 630|Tribolium castaneum beta-N-acetylglu... 22 5.3
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 21 6.9
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 21 6.9
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 21 6.9
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 21 6.9
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 21 6.9
AM292368-1|CAL23180.2| 387|Tribolium castaneum gustatory recept... 21 6.9
AM292347-1|CAL23159.2| 387|Tribolium castaneum gustatory recept... 21 6.9
AM292327-1|CAL23139.2| 387|Tribolium castaneum gustatory recept... 21 6.9
>AF322227-1|AAK01654.1| 782|Tribolium castaneum cell surface
protein chaoptin protein.
Length = 782
Score = 25.4 bits (53), Expect = 0.43
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -1
Query: 594 SWNYRGLLAPELASNCSSLKYLKCTHSDYEA 502
++N +A E+A N SSL+YL ++D A
Sbjct: 474 AFNSLPTVALEVAGNISSLRYLNLDYNDLSA 504
>EF592539-1|ABQ95985.1| 630|Tribolium castaneum
beta-N-acetylglucosaminidase FDL protein.
Length = 630
Score = 21.8 bits (44), Expect = 5.3
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = -3
Query: 310 RHLKDASPVLDHAICKSYPDSSKLTTSDARP 218
RH+K A PV+ + C S++L P
Sbjct: 68 RHIKGAIPVVSLSTCSMLCGSTQLWPQPTGP 98
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 21.4 bits (43), Expect = 6.9
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = +1
Query: 7 LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLS 117
+YAC + + V+ +RR + +++VP +L+S
Sbjct: 190 VYACCPEPYVDVTFTIKIRRRTLYYFFNLIVPCVLIS 226
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 21.4 bits (43), Expect = 6.9
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = +1
Query: 7 LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLS 117
+YAC + + V+ +RR + +++VP +L+S
Sbjct: 190 VYACCPEPYVDVTFTIKIRRRTLYYFFNLIVPCVLIS 226
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 21.4 bits (43), Expect = 6.9
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = +1
Query: 7 LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLS 117
+YAC + + V+ +RR + +++VP +L+S
Sbjct: 190 VYACCPEPYVDVTFTIKIRRRTLYYFFNLIVPCVLIS 226
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 21.4 bits (43), Expect = 6.9
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = +1
Query: 7 LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLS 117
+YAC + + V+ +RR + +++VP +L+S
Sbjct: 190 VYACCPEPYVDVTFTIKIRRRTLYYFFNLIVPCVLIS 226
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 21.4 bits (43), Expect = 6.9
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = +1
Query: 7 LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLS 117
+YAC + + V+ +RR + +++VP +L+S
Sbjct: 190 VYACCPEPYVDVTFTIKIRRRTLYYFFNLIVPCVLIS 226
>AM292368-1|CAL23180.2| 387|Tribolium castaneum gustatory receptor
candidate 47 protein.
Length = 387
Score = 21.4 bits (43), Expect = 6.9
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = -3
Query: 607 YTLLELELPRAAGTRTCLQLFLVKIFKVYSFRLRG 503
YT++ EL A+ + L ++ FK+ +RG
Sbjct: 353 YTVVNRELVTASVATIAIYLIVLLQFKISLLNMRG 387
>AM292347-1|CAL23159.2| 387|Tribolium castaneum gustatory receptor
candidate 26 protein.
Length = 387
Score = 21.4 bits (43), Expect = 6.9
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = -3
Query: 607 YTLLELELPRAAGTRTCLQLFLVKIFKVYSFRLRG 503
YT++ EL A+ + L ++ FK+ +RG
Sbjct: 353 YTVVNRELVTASVATIAIYLIVLLQFKISLLNMRG 387
>AM292327-1|CAL23139.2| 387|Tribolium castaneum gustatory receptor
candidate 6 protein.
Length = 387
Score = 21.4 bits (43), Expect = 6.9
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = -3
Query: 607 YTLLELELPRAAGTRTCLQLFLVKIFKVYSFRLRG 503
YT++ EL A+ + L ++ FK+ +RG
Sbjct: 353 YTVVNRELVTASVATIAIYLIVLLQFKISLLNMRG 387
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,587
Number of Sequences: 336
Number of extensions: 3640
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17489640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -