Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31133
         (782 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-...    62   1e-08
UniRef50_Q3TS03 Cluster: Adult male epididymis cDNA, RIKEN full-...    33   8.1  

>UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=9; cellular organisms|Rep: Endonuclease and
            reverse transcriptase-like protein - Bombyx mori (Silk
            moth)
          Length = 960

 Score = 62.5 bits (145), Expect = 1e-08
 Identities = 30/38 (78%), Positives = 30/38 (78%)
 Frame = +3

Query: 420  ASHGRRLRHVLTDPSDPITFALDAFSSNTRSRLMDLSN 533
            ASH RR RHVLTDPSDPIT ALD FSSNTRSRL    N
Sbjct: 910  ASHRRRPRHVLTDPSDPITLALDTFSSNTRSRLRSPGN 947


>UniRef50_Q3TS03 Cluster: Adult male epididymis cDNA, RIKEN
           full-length enriched library, clone:9230022O22
           product:hypothetical protein, full insert sequence; n=2;
           Mus musculus|Rep: Adult male epididymis cDNA, RIKEN
           full-length enriched library, clone:9230022O22
           product:hypothetical protein, full insert sequence - Mus
           musculus (Mouse)
          Length = 143

 Score = 33.1 bits (72), Expect = 8.1
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = -1

Query: 473 YWI*WIRKDMSKASTVTGSQVPPTPINIGMSENL*LFVRYNNAIRANAGRYNVTNRRFCN 294
           Y+I W +K + K   V G+      + +  SE   L  RYN AI  +  +Y ++ +  CN
Sbjct: 31  YYIDWGKKKLKKNMGVEGASYLGNALYLIQSEKS-LTSRYNGAINVSFSKYRLSTKLLCN 89


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 700,267,384
Number of Sequences: 1657284
Number of extensions: 12284237
Number of successful extensions: 24235
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 23708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24231
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 66262109095
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)