Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31133
         (782 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1259 + 25255775-25255780,25255880-25255967,25256142-252567...    31   1.4  
01_05_0589 + 23459847-23460344,23460493-23461296                       30   2.4  
06_02_0244 - 13445023-13445400,13445495-13446823                       28   7.3  

>07_03_1259 +
           25255775-25255780,25255880-25255967,25256142-25256728,
           25257172-25257362,25257531-25257594,25257949-25257984
          Length = 323

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = -2

Query: 703 LHERLPMRPSYSRAAASRMHLLPDRKRVPLRR 608
           LH+R+  RPS + A++SR + L D+ R  ++R
Sbjct: 233 LHKRMNARPSNAAASSSRKYYLEDKPREKMQR 264


>01_05_0589 + 23459847-23460344,23460493-23461296
          Length = 433

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -1

Query: 242 NAVCRAARGSPRLFFILGTRVLARLLRFTAINKRIHEID 126
           +A   AA G PRL F LGT V ARL     +    HE++
Sbjct: 138 SADAAAAHGVPRLVF-LGTSVFARLCNEIMVFNSFHELE 175


>06_02_0244 - 13445023-13445400,13445495-13446823
          Length = 568

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +1

Query: 328 PAFALIALLYRTKSYRFSDMPILIGVGGTCEPVTVDALDMSLRIHQI 468
           P  AL+  L+R KS++   + + I   G+CE +   A  +   +H+I
Sbjct: 356 PPTALVRSLHRGKSFKIGSLQMFIQNNGSCEDMGPRAFPVK-EVHKI 401


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,050,057
Number of Sequences: 37544
Number of extensions: 344318
Number of successful extensions: 664
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)