Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31132
         (829 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   6.0  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   8.0  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   8.0  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 780 RINSTQVIILLNCMYKFFN 724
           RI   +V+ +LN MY  F+
Sbjct: 439 RITPMEVVSMLNAMYSLFD 457


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 248 YINFTKALNG*IDLYMLSVKKSNFRSPLT*NLKKCCIVFF 367
           Y+ FT  L     +  ++V   NFRSP+T  + +   V F
Sbjct: 302 YLLFTMVLVTLSVVVTIAVLNVNFRSPVTHRMARWVRVVF 341


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 665 QMSHQCNKVNKLDSNF 712
           +M+H  N VNKL ++F
Sbjct: 494 EMTHLTNAVNKLKTSF 509


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,840
Number of Sequences: 438
Number of extensions: 4191
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)