Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31130
         (440 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos...   141   5e-35
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S...   137   8e-34
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    28   0.73 
SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizos...    25   6.8  
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    24   9.0  

>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 187

 Score =  141 bits (341), Expect = 5e-35
 Identities = 71/148 (47%), Positives = 100/148 (67%), Gaps = 2/148 (1%)
 Frame = +3

Query: 3   IDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPIS 182
           IDI   H RK +R++  S+++               T+++FN+ +L+RLF S+ NRPPIS
Sbjct: 3   IDIERHHVRKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPIS 62

Query: 183 VSRLAR--HMKKPTREGLIAVVXGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEI 356
           +S++A     K  + EG   V+ GTVT+D RL  +PK++VAAL  T+ ARARIL AGGE+
Sbjct: 63  ISKIAALTSRKSASLEGKTTVIVGTVTDDERLLTVPKLSVAALRFTKSARARILKAGGEV 122

Query: 357 LTFDXLALRAPTGKKTVLVQGQRNAREA 440
           LT D LALRAPTG  TVL++G+++AREA
Sbjct: 123 LTLDQLALRAPTGSNTVLLRGKKHAREA 150


>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score =  137 bits (331), Expect = 8e-34
 Identities = 68/148 (45%), Positives = 99/148 (66%), Gaps = 2/148 (1%)
 Frame = +3

Query: 3   IDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPIS 182
           IDI   H +K +R++  S+++               T+++FN+ +L+RLF S+ NRPPIS
Sbjct: 3   IDIERHHVKKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPIS 62

Query: 183 VSRLAR--HMKKPTREGLIAVVXGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEI 356
           +S++A     K  + +    VV GTVT+D R+  +PK+++AAL  T+ ARARIL AGGE+
Sbjct: 63  ISKIAALTSRKSASSQNKTTVVVGTVTDDERMLTVPKLSIAALRFTKSARARILKAGGEV 122

Query: 357 LTFDXLALRAPTGKKTVLVQGQRNAREA 440
           LT D LALRAPTG  TVLV+G+++AREA
Sbjct: 123 LTLDQLALRAPTGSNTVLVRGKKHAREA 150


>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 27.9 bits (59), Expect = 0.73
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 261 DVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDXL 374
           D+  Y+IP + +  +  TE+A+ R     G+IL  D +
Sbjct: 59  DLLFYEIPFLLIKHIENTEEAKLRFALPQGQILEIDTI 96


>SPAPB1A10.11c |||glutamyl-tRNA synthetase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 9/32 (28%), Positives = 13/32 (40%)
 Frame = -1

Query: 248 PXYHGNQTLTSWLLHVARQTRHRDWWPVDTAH 153
           P YH    +   L+H+    R  +W P    H
Sbjct: 220 PTYHFANVVDDHLMHITHVIRGEEWVPSTIKH 251


>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 249 SPXPRQSNPHELASSCGAPNETQ 181
           SP   +++ + L S+CG+PN  Q
Sbjct: 122 SPNSLENSTNPLLSNCGSPNSFQ 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,727,308
Number of Sequences: 5004
Number of extensions: 33351
Number of successful extensions: 83
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)