Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31130
         (440 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1667 + 28484069-28484071,28484151-28484240,28484339-284844...   140   3e-34
05_01_0401 + 3169979-3169981,3170071-3170160,3170556-3170684,317...   139   8e-34
03_02_0954 - 12687373-12687582,12688885-12689067,12689160-126892...   126   1e-29
06_01_1101 - 9044679-9045320,9045484-9045890,9046020-9046274,904...    29   2.2  
11_01_0520 + 4078075-4078198,4078726-4078957,4079068-4079147,407...    28   2.9  
01_06_0579 + 30379243-30379617                                         28   2.9  
09_04_0365 - 16962608-16963174,16963301-16963486,16963824-169638...    27   6.7  
07_03_0435 + 18182657-18183509,18184477-18184574,18184663-181848...    27   6.7  
12_01_1117 - 11922304-11922423,11922673-11922801,11923070-119231...    27   8.8  
02_05_0895 - 32593155-32593190,32594228-32594279,32594544-325945...    27   8.8  

>07_03_1667 +
           28484069-28484071,28484151-28484240,28484339-28484491,
           28484575-28484757,28486137-28486295
          Length = 195

 Score =  140 bits (340), Expect = 3e-34
 Identities = 73/145 (50%), Positives = 97/145 (66%), Gaps = 6/145 (4%)
 Frame = +3

Query: 24  DRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARH 203
           ++K +RT  +S+D+               T + FN ++L+RLFMS+ NRPP+S+ RL R 
Sbjct: 11  NKKTKRTAPRSEDVYLKLIVKLYRFLVRRTKSHFNAVILKRLFMSKTNRPPLSMRRLVRF 70

Query: 204 M--KKPTREGL----IAVVXGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTF 365
           M  K P R  +    IAV+ GTVT+D R+Y++P M VAAL  TE ARARI+ AGGE LTF
Sbjct: 71  MEGKVPDRHAISGDQIAVIVGTVTDDKRIYEVPAMKVAALRFTETARARIINAGGECLTF 130

Query: 366 DXLALRAPTGKKTVLVQGQRNAREA 440
           D LALRAP G+ TVL++G +NAREA
Sbjct: 131 DQLALRAPLGQNTVLLRGPKNAREA 155


>05_01_0401 +
           3169979-3169981,3170071-3170160,3170556-3170684,
           3170814-3170999,3172001-3172159
          Length = 188

 Score =  139 bits (337), Expect = 8e-34
 Identities = 71/139 (51%), Positives = 94/139 (67%)
 Frame = +3

Query: 24  DRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARH 203
           ++K +RT  +S D+               T + FN ++L+RLFMS+ NRPP+S+ RLA+ 
Sbjct: 11  NKKTKRTAPRSDDVYLKLLVKLYRFLVRRTKSNFNAVILKRLFMSKTNRPPLSLRRLAKF 70

Query: 204 MKKPTREGLIAVVXGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDXLALR 383
           M+    E  IAV+ GTVT+D R+ +IPKM V AL  TE ARARI+ AGGE LTFD LALR
Sbjct: 71  MEGK-EENNIAVIVGTVTDDKRIQEIPKMKVTALRFTETARARIVNAGGECLTFDQLALR 129

Query: 384 APTGKKTVLVQGQRNAREA 440
           AP G+ TVL++G +NAREA
Sbjct: 130 APLGENTVLLRGPKNAREA 148


>03_02_0954 -
           12687373-12687582,12688885-12689067,12689160-12689288,
           12689375-12689464,12689548-12689550
          Length = 204

 Score =  126 bits (303), Expect = 1e-29
 Identities = 64/129 (49%), Positives = 84/129 (65%)
 Frame = +3

Query: 24  DRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARH 203
           ++K +RT  KS D+               T + FN ++LRRLFMS+ NRPP+S+ RL R 
Sbjct: 11  NKKTKRTAPKSDDVYLKLIVKLYRFLVRRTKSPFNAVILRRLFMSKTNRPPLSLRRLVRF 70

Query: 204 MKKPTREGLIAVVXGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDXLALR 383
           M+   +E  IAV+ GTVT+D R+Y++P M VAAL  TE ARARI+  GGE LTFD LALR
Sbjct: 71  MEG--KENQIAVIVGTVTDDKRVYEVPAMKVAALRFTETARARIVNTGGECLTFDQLALR 128

Query: 384 APTGKKTVL 410
           AP G+ T +
Sbjct: 129 APLGQNTYI 137


>06_01_1101 -
           9044679-9045320,9045484-9045890,9046020-9046274,
           9046375-9046498,9047237-9047289,9047388-9047648,
           9047795-9047848,9047975-9048458,9048554-9048592
          Length = 772

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -2

Query: 247 PXTTAIKPSRVGFFMWR-AKRDTEIGGRLIRLIKSR 143
           P TTA KP RV F + +  K D E+ G L  L+++R
Sbjct: 676 PNTTAPKPKRVRFALPKDTKIDREVRGELQELMEAR 711


>11_01_0520 +
           4078075-4078198,4078726-4078957,4079068-4079147,
           4079256-4079409,4079438-4079494,4080733-4080811,
           4081013-4081094,4081168-4081223,4081310-4081492
          Length = 348

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 344 SSQNACTSFFGNMKSSHRHLRYLVQSHVICDCP 246
           SS ++  SF  +  SS+RHL  L+ +  +  CP
Sbjct: 96  SSLDSVRSFAKSFNSSYRHLNVLINNAGVMSCP 128


>01_06_0579 + 30379243-30379617
          Length = 124

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = -3

Query: 276 CTVSRHL*LSPXPRQSNPHELASS 205
           CT+S H   SP  R S+PH LASS
Sbjct: 11  CTISCH---SPMRRSSSPHRLASS 31


>09_04_0365 -
           16962608-16963174,16963301-16963486,16963824-16963896,
           16964307-16964497,16964982-16965198,16965394-16965797,
           16966593-16966658,16966668-16966721,16966945-16967079,
           16967194-16967391,16967734-16967918,16968990-16969527
          Length = 937

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 229 KPSRVGFFMWRAKRDTEIG 173
           +PS+V FFMW A+R+   G
Sbjct: 899 EPSKVKFFMWLAEREVSHG 917


>07_03_0435 +
           18182657-18183509,18184477-18184574,18184663-18184833,
           18185524-18185624,18185702-18185837,18186007-18186057,
           18186202-18186489,18186610-18186844,18186924-18187204,
           18187336-18187557
          Length = 811

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +2

Query: 137 STPALYEPYQPATNLCV-SFGAPHEEANS 220
           S PA ++ Y+P+TNL + S+  P+  A+S
Sbjct: 701 SVPAYFQQYEPSTNLILPSYLLPYAAASS 729


>12_01_1117 -
           11922304-11922423,11922673-11922801,11923070-11923155,
           11923724-11923863,11923888-11924119,11924297-11924733,
           11925240-11925559
          Length = 487

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +2

Query: 236 RGXGDSHK*RETVQDTEDDGGCSSCYRKSSCTHFGC 343
           RG    H  +E V   + DGGCS  Y K    H  C
Sbjct: 333 RGIMRKHAVQECV--LKSDGGCSCTYMKPKLRHLPC 366


>02_05_0895 -
           32593155-32593190,32594228-32594279,32594544-32594584,
           32594795-32594906,32595195-32595268,32595349-32595587,
           32595710-32596678,32596725-32596878,32596957-32597244,
           32597393-32597534,32598679-32598752,32598870-32598890
          Length = 733

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 266 ETVQDTEDDGGCSSCYRKSS 325
           E VQ  +DD G S C R+SS
Sbjct: 253 ENVQSDDDDSGPSQCMRESS 272


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,690,843
Number of Sequences: 37544
Number of extensions: 239566
Number of successful extensions: 556
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)