Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31130
         (440 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)              149   1e-36
SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.3  
SB_15990| Best HMM Match : zf-CCCH (HMM E-Value=4.1)                   27   6.9  
SB_4198| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.9  
SB_426| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)                   27   9.1  
SB_10636| Best HMM Match : Band_7 (HMM E-Value=1.1e-05)                27   9.1  

>SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1066

 Score =  149 bits (361), Expect = 1e-36
 Identities = 76/146 (52%), Positives = 97/146 (66%)
 Frame = +3

Query: 3   IDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPIS 182
           IDI  KH +K  R E  SQ++               TNAKFNQIV++RL MSR  RPP+S
Sbjct: 110 IDIEKKHPKKNYRREPVSQNVYIRLLVKLYRFLSRRTNAKFNQIVMKRLCMSRTKRPPLS 169

Query: 183 VSRLARHMKKPTREGLIAVVXGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILT 362
           ++RL R MK    +  I VV G++T+D R++++P + + AL  +E ARARIL AGGEILT
Sbjct: 170 LARLVRKMKASGHKDKICVVVGSITDDKRIFEVPALKICALRFSETARARILKAGGEILT 229

Query: 363 FDXLALRAPTGKKTVLVQGQRNAREA 440
           FD LALRAP G+ TVL+QG R AREA
Sbjct: 230 FDQLALRAPLGQNTVLLQGPRKAREA 255


>SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 22/79 (27%), Positives = 36/79 (45%)
 Frame = +3

Query: 186 SRLARHMKKPTREGLIAVVXGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTF 365
           SRL   MK PT++G+   V   V+      +   +T A     E+ RAR+L   G +   
Sbjct: 92  SRLYEEMKHPTQDGMFVAVNSEVSVTFVGKEKEDVTFAKCAWFER-RARMLKGFGFVTFR 150

Query: 366 DXLALRAPTGKKTVLVQGQ 422
           D   + +   KK  ++ G+
Sbjct: 151 DPATIESVLAKKPHILDGK 169


>SB_15990| Best HMM Match : zf-CCCH (HMM E-Value=4.1)
          Length = 236

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 32  SSAHRS*ISRYLLEVTCKALQILGQT 109
           ++ HR  ++RY+   TC  L + G T
Sbjct: 84  ATCHRQHVTRYMSHATCHTLHVTGNT 109


>SB_4198| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1001

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 236 GNQTLTSWLLHVARQTRHRDWWP 168
           G  T + W LH ++Q RH+  WP
Sbjct: 177 GIDTGSLWQLHYSQQWRHKGRWP 199


>SB_426| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)
          Length = 998

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 313 VT*RAATVIFGILYSLTSFVTVPXTTAIKPSR 218
           +T R  T++FGIL  L +      T  IKP R
Sbjct: 616 ITLRPITILFGILALLLNLFVFVTTVGIKPLR 647


>SB_10636| Best HMM Match : Band_7 (HMM E-Value=1.1e-05)
          Length = 152

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +3

Query: 261 DVRL-YKIPKMTVAALHVTEKARARILAAGGEI 356
           DVRL  ++ +   A    T +ARA+I+AA GE+
Sbjct: 66  DVRLPQQLQRAMAAEAEATREARAKIIAAEGEM 98


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,311,120
Number of Sequences: 59808
Number of extensions: 262426
Number of successful extensions: 580
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 859323430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)