Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31130
(440 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g05590.1 68416.m00621 60S ribosomal protein L18 (RPL18B) simi... 138 2e-33
At5g27850.1 68418.m03341 60S ribosomal protein L18 (RPL18C) 60S ... 133 4e-32
At2g47570.1 68415.m05936 60S ribosomal protein L18 (RPL18A) 104 2e-23
At3g59820.1 68416.m06675 calcium-binding mitochondrial protein-r... 28 3.2
At1g32190.1 68414.m03959 expressed protein 27 4.2
At2g04330.1 68415.m00429 hypothetical protein contains Pfam prof... 27 5.6
At1g18750.1 68414.m02338 MADS-box protein (AGL65) similar to hom... 27 5.6
At5g35794.1 68418.m04297 hypothetical protein contains Pfam prof... 27 7.4
At4g03890.1 68417.m00546 hypothetical protein contains Pfam prof... 27 7.4
At2g23480.1 68415.m02803 hypothetical protein contains Pfam prof... 27 7.4
At1g04930.1 68414.m00490 hydroxyproline-rich glycoprotein family... 27 7.4
At3g28390.1 68416.m03547 P-glycoprotein, putative similar to P-g... 26 9.8
At2g02640.1 68415.m00203 DC1 domain-containing protein contain... 26 9.8
>At3g05590.1 68416.m00621 60S ribosomal protein L18 (RPL18B) similar
to GB:P42791
Length = 187
Score = 138 bits (333), Expect = 2e-33
Identities = 69/138 (50%), Positives = 95/138 (68%)
Frame = +3
Query: 27 RKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARHM 206
+K +RT KS D+ TN+KFN ++L+RLFMS++N+ P+S+SRL M
Sbjct: 12 KKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKAPLSLSRLVEFM 71
Query: 207 KKPTREGLIAVVXGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDXLALRA 386
+E IAV+ GT+T+D+R+++IP M V AL TE+ARARI AGGE LTFD LALRA
Sbjct: 72 TG--KEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRA 129
Query: 387 PTGKKTVLVQGQRNAREA 440
P G+ TVL++G +N+REA
Sbjct: 130 PLGQNTVLLRGPKNSREA 147
>At5g27850.1 68418.m03341 60S ribosomal protein L18 (RPL18C) 60S
ribosomal protein L18, Arabidopsis thaliana,
SWISSPROT:RL18_ARATH
Length = 187
Score = 133 bits (322), Expect = 4e-32
Identities = 66/138 (47%), Positives = 94/138 (68%)
Frame = +3
Query: 27 RKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARHM 206
+K +RT KS D+ +N+ FN ++L+RLFMS++N+ P+S+SRL M
Sbjct: 12 KKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKAPLSLSRLVEFM 71
Query: 207 KKPTREGLIAVVXGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDXLALRA 386
++ IAV+ GT+T+D+R+++IP M V AL TE+ARARI AGGE LTFD LALRA
Sbjct: 72 TG--KDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRA 129
Query: 387 PTGKKTVLVQGQRNAREA 440
P G+ TVL++G +N+REA
Sbjct: 130 PLGQNTVLLRGPKNSREA 147
>At2g47570.1 68415.m05936 60S ribosomal protein L18 (RPL18A)
Length = 135
Score = 104 bits (250), Expect = 2e-23
Identities = 54/97 (55%), Positives = 71/97 (73%), Gaps = 1/97 (1%)
Frame = +3
Query: 153 MSRINRPPISVSRLARHMKKPTREGLIAVVXGTVTNDVRLYKIPKMTVAALHVTEKARAR 332
MS++N+ P+S+SRL R+M ++G IAV+ GTVT+DVR+ +P +TV AL TE ARAR
Sbjct: 1 MSKVNKAPLSLSRLVRYMDG--KDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARAR 58
Query: 333 ILAAGGEILTFDXLALRAPT-GKKTVLVQGQRNAREA 440
I AGGE LTFD LAL PT + TVL++G +N REA
Sbjct: 59 IHKAGGECLTFDQLALPCPTWSENTVLLRGPKNTREA 95
>At3g59820.1 68416.m06675 calcium-binding mitochondrial
protein-related contains weak similarity to
Calcium-binding mitochondrial protein Anon-60Da
(Swiss-Prot:P91927) [Drosophila melanogaster]
Length = 755
Score = 27.9 bits (59), Expect = 3.2
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 126 NQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLI 233
+Q V + S INRPP+ + H R+GL+
Sbjct: 34 SQTVHSHAYHSGINRPPVETKPVTEHKSFTRRDGLL 69
>At1g32190.1 68414.m03959 expressed protein
Length = 422
Score = 27.5 bits (58), Expect = 4.2
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +2
Query: 299 CSSCYRKSSCTHFGCWR 349
CSSC+ K C CW+
Sbjct: 359 CSSCFGKPKCPKCSCWK 375
>At2g04330.1 68415.m00429 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 564
Score = 27.1 bits (57), Expect = 5.6
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -2
Query: 280 ILYSLTSFVTVPXTTAIKPSRVGFFMWRAKRDTEIGGRLIRLIKSR 143
+LY LTS + VP T + S + F RA D I ++ R
Sbjct: 347 VLYFLTSSIVVPTKTGERASPIDDFCVRAASDLTFSFEAIPSLRER 392
>At1g18750.1 68414.m02338 MADS-box protein (AGL65) similar to
homeodomain transcription factor (AGL30) GI:3461830 from
[Arabidopsis thaliana]; contains Pfam domain PF00319:
SRF-type transcription factor (DNA-binding and
dimerisation domain); PMID: 12837945
Length = 389
Score = 27.1 bits (57), Expect = 5.6
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -3
Query: 438 PHEHFAXLVPVLSSCQXEHEEPXDQ 364
PH +PV SSC E +P DQ
Sbjct: 229 PHREMDGSIPVYSSCFFESTKPEDQ 253
>At5g35794.1 68418.m04297 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 662
Score = 26.6 bits (56), Expect = 7.4
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2
Query: 280 ILYSLTSFVTVPXTTAIKPSRVGFFMWRAKRD 185
+LY LTS + VP T + S + F RA D
Sbjct: 377 VLYFLTSIIAVPTKTGERASPIDDFCVRAASD 408
>At4g03890.1 68417.m00546 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 301
Score = 26.6 bits (56), Expect = 7.4
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = -2
Query: 283 GILYSLTSFVTVPXTTAIKPSRVGFFMWRAKRD 185
G+LY LTS + V T K S V F RA D
Sbjct: 101 GVLYFLTSIIVVLTKTGEKGSPVDNFCLRAASD 133
>At2g23480.1 68415.m02803 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 705
Score = 26.6 bits (56), Expect = 7.4
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2
Query: 280 ILYSLTSFVTVPXTTAIKPSRVGFFMWRAKRD 185
+LY LTS + VP T + S + F RA D
Sbjct: 440 VLYFLTSIIAVPTKTGERASPIDDFCVRAASD 471
>At1g04930.1 68414.m00490 hydroxyproline-rich glycoprotein family
protein Common family member: At2g32840 [Arabidopsis
thaliana]
Length = 332
Score = 26.6 bits (56), Expect = 7.4
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +3
Query: 159 RINRPPISVSRLARHMKKPTREGLIAVVXG 248
R+ PP S+ +R+ K +++G +AVV G
Sbjct: 183 RVAPPPTSILDTSRNRKARSKDGALAVVRG 212
>At3g28390.1 68416.m03547 P-glycoprotein, putative similar to
P-glycoprotein homologue GI:2292907 from [Hordeum
vulgare subsp. vulgare]
Length = 1225
Score = 26.2 bits (55), Expect = 9.8
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 363 FDXLALRAPTGKKTVLVQGQRNAR 434
FD L LR P+GK LV G + +
Sbjct: 365 FDDLCLRVPSGKTVALVGGSGSGK 388
>At2g02640.1 68415.m00203 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 627
Score = 26.2 bits (55), Expect = 9.8
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2
Query: 299 CSSCYRKSSCTHFGCWRRN 355
CS+C RKS+ + C+ RN
Sbjct: 423 CSACMRKSNGFGYSCYNRN 441
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,248,449
Number of Sequences: 28952
Number of extensions: 187538
Number of successful extensions: 443
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 702840360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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