Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31127
         (454 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ...    27   1.8  
SPAC1002.18 |urg3||DUF1688 family protein|Schizosaccharomyces po...    24   9.5  
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz...    24   9.5  

>SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination
           repair protein Sfr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 21  KNLKVSFVTTENR*KCAVKNFGQQLNTLVKLW 116
           +NL+   +T E   K   KN  + L TL++ W
Sbjct: 194 RNLQEQLITAETARKVEAKNEDKDLQTLIQKW 225


>SPAC1002.18 |urg3||DUF1688 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 399

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = -1

Query: 226 SLVTTAALPFRPKRITASRQK*AGPWYLPVRTHTRSYHNLTK 101
           S + T  +P  P R +   Q     WYL      + +H LT+
Sbjct: 228 SELQTLLIPIWPVRTSFEGQNLGDAWYLSTIDAIQPFHKLTQ 269


>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -3

Query: 218 YNGCPTLQTETHYCFTAEIGRA 153
           Y  CP L +   +CF+A   +A
Sbjct: 517 YPACPLLTSRVRFCFSASHNKA 538


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,674,911
Number of Sequences: 5004
Number of extensions: 29829
Number of successful extensions: 35
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)