Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31127
         (454 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0386 + 20822376-20822982,20823715-20824244,20824315-20825127     27   5.3  
12_02_0872 + 23884715-23885770                                         27   9.3  

>05_04_0386 + 20822376-20822982,20823715-20824244,20824315-20825127
          Length = 649

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +3

Query: 156 PAYFCREAVMRFGLKGRAAVVTKLRS*NLYLKVAGAFTWXDVYGLLT 296
           P  + R    +FGL+G  A +   R   L  ++   + W +++G+L+
Sbjct: 574 PLRYARLIYSQFGLEGLFAALLGHRPVRLLKQLRSIYPWQNIFGILS 620


>12_02_0872 + 23884715-23885770
          Length = 351

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = +3

Query: 132 VRTGRYHGPAYFCREAVMRFGLKGRAAVVTKLRS*NLYLKVAG 260
           +R G +HG A      V R G   RAAV       + Y  VAG
Sbjct: 1   MRRGGFHGAAAASPTTVARAGRVMRAAVAAFFHGYHCYTSVAG 43


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,453,978
Number of Sequences: 37544
Number of extensions: 188616
Number of successful extensions: 257
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)