Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31127
         (454 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81529-12|CAB04303.1|  492|Caenorhabditis elegans Hypothetical p...    29   1.6  
AL023816-5|CAA19434.1|  492|Caenorhabditis elegans Hypothetical ...    29   1.6  
Z92786-1|CAB07203.1|  250|Caenorhabditis elegans Hypothetical pr...    27   8.4  
U29614-6|AAA68809.2|  378|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>Z81529-12|CAB04303.1|  492|Caenorhabditis elegans Hypothetical
           protein T05G11.1 protein.
          Length = 492

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 139 VRTHTRSYHNLTKVFNC 89
           VR H +S HN+ KV+NC
Sbjct: 221 VRDHMKSQHNIKKVYNC 237


>AL023816-5|CAA19434.1|  492|Caenorhabditis elegans Hypothetical
           protein T05G11.1 protein.
          Length = 492

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 139 VRTHTRSYHNLTKVFNC 89
           VR H +S HN+ KV+NC
Sbjct: 221 VRDHMKSQHNIKKVYNC 237


>Z92786-1|CAB07203.1|  250|Caenorhabditis elegans Hypothetical
           protein F47H4.1 protein.
          Length = 250

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 139 VRTHTRSYHNLTKVFNC 89
           +R H R+ HNL +VF C
Sbjct: 67  IREHMRNEHNLAQVFTC 83


>U29614-6|AAA68809.2|  378|Caenorhabditis elegans Hypothetical
           protein F18E9.3 protein.
          Length = 378

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 132 VRTGRYHGPAYFCR 173
           + TGRY GP Y CR
Sbjct: 302 IHTGRYSGPTYNCR 315


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,226,112
Number of Sequences: 27780
Number of extensions: 170898
Number of successful extensions: 232
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)