Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31127
         (454 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.51 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.51 
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   3.6  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   3.6  
DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              21   8.3  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.6 bits (51), Expect = 0.51
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -2

Query: 216 QRLPYPSDRNALL-LHGRNRQGRGTYPCGLTR 124
           ++LP    ++ LL L+G NR+ RG Y C + R
Sbjct: 372 RQLPGTGRQSELLRLNGINREDRGMYQCIVRR 403


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.6 bits (51), Expect = 0.51
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -2

Query: 216 QRLPYPSDRNALL-LHGRNRQGRGTYPCGLTR 124
           ++LP    ++ LL L+G NR+ RG Y C + R
Sbjct: 372 RQLPGTGRQSELLRLNGINREDRGMYQCIVRR 403


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +3

Query: 312 KNLRTTLNATI--NQYFFNL*TRNKFHGQFNAK*FAGVINI 428
           K + +  N TI  N Y +N    N  +  +N K +  +INI
Sbjct: 79  KIISSLSNNTIHNNNYKYNYNNNNYNNNNYNKKLYYNIINI 119


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +3

Query: 312 KNLRTTLNATI--NQYFFNL*TRNKFHGQFNAK*FAGVINI 428
           K + +  N TI  N Y +N    N  +  +N K +  +INI
Sbjct: 79  KIISSLSNNTIHNNNYKYNYNNNNYNNNNYNKKLYYNIINI 119


>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 127 TRSYHNLTKVFNC*PKFLT 71
           T  +  +TK+F C  KF T
Sbjct: 110 TNVHLKITKIFQCITKFKT 128


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,534
Number of Sequences: 438
Number of extensions: 2475
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11943513
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)