Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31125
         (472 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4Z0C1 Cluster: Putative uncharacterized protein; n=3; ...    33   2.4  
UniRef50_Q6CDH4 Cluster: Yarrowia lipolytica chromosome C of str...    32   5.5  
UniRef50_P15215 Cluster: Laminin subunit gamma-1 precursor; n=16...    32   5.5  
UniRef50_UPI00006A290D Cluster: UPI00006A290D related cluster; n...    32   7.3  
UniRef50_Q4PAL6 Cluster: Putative uncharacterized protein; n=1; ...    32   7.3  
UniRef50_Q74BJ6 Cluster: Valyl-tRNA synthetase; n=30; Bacteria|R...    32   7.3  
UniRef50_Q9XVI2 Cluster: Putative uncharacterized protein sys-1;...    31   9.7  
UniRef50_Q0UU23 Cluster: Putative uncharacterized protein; n=1; ...    31   9.7  

>UniRef50_Q4Z0C1 Cluster: Putative uncharacterized protein; n=3;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium berghei
          Length = 275

 Score = 33.5 bits (73), Expect = 2.4
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = +2

Query: 431 RGGARYPIRPIVSR 472
           RGGARYPIRPIVSR
Sbjct: 260 RGGARYPIRPIVSR 273


>UniRef50_Q6CDH4 Cluster: Yarrowia lipolytica chromosome C of strain
            CLIB122 of Yarrowia lipolytica; n=2;
            Saccharomycetales|Rep: Yarrowia lipolytica chromosome C
            of strain CLIB122 of Yarrowia lipolytica - Yarrowia
            lipolytica (Candida lipolytica)
          Length = 1768

 Score = 32.3 bits (70), Expect = 5.5
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = -1

Query: 202  VMRMSMRSMQPENMQSMQSTPGGRCTQQRPERYMQQLQGTCSSPAEAWLTRKPGEQR 32
            V  MS + M P+    MQ +P G    Q+   Y+QQ      SP   + T  PG+ R
Sbjct: 1585 VQNMSPQGMSPQGASYMQQSPQGASYMQQSPSYVQQAPLGQMSPTGGFQT-SPGQLR 1640


>UniRef50_P15215 Cluster: Laminin subunit gamma-1 precursor; n=16;
           Endopterygota|Rep: Laminin subunit gamma-1 precursor -
           Drosophila melanogaster (Fruit fly)
          Length = 1639

 Score = 32.3 bits (70), Expect = 5.5
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 9/51 (17%)
 Frame = +3

Query: 36  CSPGFRVSQASAGELH--VPCSC------CIYRSGRC-CVHRPPGVLCILC 161
           C+PG+R S A  G     +PC C      C   +GRC C H   G  C  C
Sbjct: 724 CAPGYRHSPARGGPFMPCIPCDCHGHADICDSETGRCICQHNTHGDNCDQC 774


>UniRef50_UPI00006A290D Cluster: UPI00006A290D related cluster; n=1;
           Xenopus tropicalis|Rep: UPI00006A290D UniRef100 entry -
           Xenopus tropicalis
          Length = 303

 Score = 31.9 bits (69), Expect = 7.3
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = -1

Query: 199 MRMSMRSMQPENMQSMQSTPGGRCTQQRPERYM-QQLQGTCSSPAEAWLTRKPGEQRRSS 23
           +R  M+  QP  +Q  QS PG    QQ+P+R M QQ +     P +A  + +PG  ++  
Sbjct: 213 IRQPMQQQQPP-LQQRQSVPGAPQQQQQPQRPMTQQPRPNPQGPGQA--SSRPGGPQKPQ 269

Query: 22  I 20
           +
Sbjct: 270 V 270


>UniRef50_Q4PAL6 Cluster: Putative uncharacterized protein; n=1;
           Ustilago maydis|Rep: Putative uncharacterized protein -
           Ustilago maydis (Smut fungus)
          Length = 525

 Score = 31.9 bits (69), Expect = 7.3
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -1

Query: 181 SMQPENMQSMQSTPGGRCTQQR-PERYMQQLQGTCSSPAEAWLTRKPGEQRRS 26
           S+ PE   +     G R T    P+R +++L  TC SP   W   KP ++R S
Sbjct: 250 SLDPEETSTQV---GDRATAAPDPQRAIEELGVTCDSPLNTWTAGKPLDERAS 299


>UniRef50_Q74BJ6 Cluster: Valyl-tRNA synthetase; n=30; Bacteria|Rep:
           Valyl-tRNA synthetase - Geobacter sulfurreducens
          Length = 887

 Score = 31.9 bits (69), Expect = 7.3
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -3

Query: 353 SGFQAPGRKIKSVANHTFLYCNQINKIYHINIFGFMNLDVF 231
           + F A GR IK        Y N +NKI++ + F  MNL+ F
Sbjct: 555 AAFAAQGRDIKLAEERIAGYRNFVNKIWNASRFALMNLEGF 595


>UniRef50_Q9XVI2 Cluster: Putative uncharacterized protein sys-1;
           n=3; Caenorhabditis|Rep: Putative uncharacterized
           protein sys-1 - Caenorhabditis elegans
          Length = 811

 Score = 31.5 bits (68), Expect = 9.7
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -1

Query: 181 SMQPENMQSMQSTPGGRCTQQRPERYMQQLQGTCSSPAEAWLTRKPGEQRR 29
           SMQP   Q  Q TP    TQQ+ +   QQ +   SSP+ +     P + ++
Sbjct: 57  SMQPPPSQQQQMTPQALSTQQQQQVQQQQQRQLYSSPSPSRGPAAPAQNQK 107


>UniRef50_Q0UU23 Cluster: Putative uncharacterized protein; n=1;
           Phaeosphaeria nodorum|Rep: Putative uncharacterized
           protein - Phaeosphaeria nodorum (Septoria nodorum)
          Length = 726

 Score = 31.5 bits (68), Expect = 9.7
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 87  PCSCCIYRSGRCCVHRPPGVLCILCIF 167
           PC  C  R  RC +H     LC+LC F
Sbjct: 59  PCDACRRRKSRCVIHE-GAALCVLCEF 84


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 328,030,605
Number of Sequences: 1657284
Number of extensions: 4334949
Number of successful extensions: 12223
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12214
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 26030843530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)