Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31125
         (472 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.      21   5.7  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    21   7.6  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    21   7.6  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    21   7.6  

>DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.
          Length = 162

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +3

Query: 33  RCSPGFRVSQASAGELHVPCSCC 101
           RC+   +VS +   ++   C CC
Sbjct: 68  RCASYIQVSGSKIWQMERSCMCC 90


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 6/20 (30%), Positives = 11/20 (55%)
 Frame = +3

Query: 102 IYRSGRCCVHRPPGVLCILC 161
           + + G  C++ PPG+    C
Sbjct: 109 VVKHGGSCLYVPPGIFKSTC 128


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 6/20 (30%), Positives = 11/20 (55%)
 Frame = +3

Query: 102 IYRSGRCCVHRPPGVLCILC 161
           + + G  C++ PPG+    C
Sbjct: 109 VVKHGGSCLYVPPGIFKSTC 128


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 6/20 (30%), Positives = 11/20 (55%)
 Frame = +3

Query: 102 IYRSGRCCVHRPPGVLCILC 161
           + + G  C++ PPG+    C
Sbjct: 109 VVKHGGSCLYVPPGIFKSTC 128


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,941
Number of Sequences: 336
Number of extensions: 1106
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10931752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)