Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31125
         (472 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    22   2.9  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    22   2.9  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    22   2.9  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    22   2.9  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   8.8  

>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 311 NHTFLYCNQINKIYH 267
           N+  LYCN   K+Y+
Sbjct: 95  NYKKLYCNNYKKLYY 109


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 311 NHTFLYCNQINKIYH 267
           N+  LYCN   K+Y+
Sbjct: 95  NYKKLYCNNYKKLYY 109


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 311 NHTFLYCNQINKIYH 267
           N+  LYCN   K+Y+
Sbjct: 95  NYKKLYCNNYRKLYY 109


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +3

Query: 33  RCSPGFRVSQASAGELHVPCSCC 101
           RCS   +VS +   ++   C CC
Sbjct: 56  RCSSYLQVSGSKIWQMERSCMCC 78


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -3

Query: 353 SGFQAPGRKIKSVANHTFLYCNQI 282
           SGF    ++++++A   F + NQ+
Sbjct: 8   SGFANSVKELRNLAQQAFAHSNQL 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,630
Number of Sequences: 438
Number of extensions: 1200
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12682287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)