Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31125
         (472 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g01925.1 68417.m00256 DC1 domain-containing protein low simil...    28   2.8  
At5g07760.1 68418.m00888 formin homology 2 domain-containing pro...    28   3.7  
At3g13750.1 68416.m01735 beta-galactosidase, putative / lactase,...    28   3.7  
At3g27710.1 68416.m03460 zinc finger protein-related contains si...    27   4.8  
At2g16090.1 68415.m01845 zinc finger protein-related contains si...    27   4.8  
At4g11080.1 68417.m01800 high mobility group (HMG1/2) family pro...    27   6.4  
At1g18550.1 68414.m02314 kinesin motor protein-related contains ...    27   6.4  
At3g57510.1 68416.m06402 endo-polygalacturonase (ADPG1) identica...    27   8.5  
At3g27720.1 68416.m03461 zinc finger protein-related contains Pf...    27   8.5  
At1g74160.1 68414.m08589 expressed protein                             27   8.5  

>At4g01925.1 68417.m00256 DC1 domain-containing protein low
           similarity to UV-B light insensitive ULI3 [Arabidopsis
           thaliana] GI:17225050; contains Pfam profile PF03107:
           DC1 domain
          Length = 399

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 90  CSCCIYRSGRCCVHRPP 140
           CS C +  G CCV RPP
Sbjct: 148 CSSCNFTLGLCCVLRPP 164


>At5g07760.1 68418.m00888 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 853

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -1

Query: 169 ENMQSMQSTPGGRCTQQRPERYMQQLQ 89
           ENM+ + S  GG+ T ++ E+Y Q+L+
Sbjct: 248 ENMELLMSYTGGKWTLEKWEQYFQELR 274


>At3g13750.1 68416.m01735 beta-galactosidase, putative / lactase,
           putative similar to beta-galactosidase precursor
           SP:P48980 from [Lycopersicon esculentum]
          Length = 847

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
 Frame = +3

Query: 30  LRCSPGFRVSQASAGELHVPCSCC-IYRSGRCCVHRPPGVLCILCI 164
           L+C PG +++         P   C  YR G C  H        LC+
Sbjct: 769 LQCGPGQKITTVKFASFGTPEGTCGSYRQGSCHAHHSYDAFNKLCV 814


>At3g27710.1 68416.m03460 zinc finger protein-related contains
           similarity to zinc finger proteins and Pfam domain,
           PF01485: IBR domain
          Length = 537

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +3

Query: 21  ILDLRCSPGFRVSQASAGELHVPCSCCIYR 110
           ++++ CS G +   +   E H PCSC +++
Sbjct: 229 VVEVGCSCGLQFCFSCLSESHSPCSCLMWK 258


>At2g16090.1 68415.m01845 zinc finger protein-related contains
           similarity to zinc finger proteins and Pfam domain,
           PF01485: IBR domain
          Length = 593

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = +3

Query: 18  QILDLRCSPGFRVSQASAGELHVPCSCCIYRSGR 119
           ++ ++ CS G +   + + + H PCSC ++   R
Sbjct: 231 ELCEVECSCGLQFCFSCSSQAHSPCSCVMWELWR 264


>At4g11080.1 68417.m01800 high mobility group (HMG1/2) family
           protein similar to SP|P40618 High mobility group protein
           HMG2A {Gallus gallus}; contains Pfam profile PF00505:
           HMG (high mobility group) box
          Length = 446

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 12/60 (20%), Positives = 31/60 (51%)
 Frame = -1

Query: 214 NKNMVMRMSMRSMQPENMQSMQSTPGGRCTQQRPERYMQQLQGTCSSPAEAWLTRKPGEQ 35
           NK+++    M   + +N+   +  P  +  ++  E Y+Q+++G   +  E  +++K  E+
Sbjct: 268 NKSVIEVAKMAGEEWKNLSEEKKAPYDQMAKKNKEIYLQEMEGYKRTKEEEAMSQKKEEE 327


>At1g18550.1 68414.m02314 kinesin motor protein-related contains
           similarity to kinesin-related protein GI:4493964 from
           [Plasmodium falciparum]
          Length = 799

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -1

Query: 181 SMQPENMQSMQSTPGGRCTQQRPERYMQQLQGTCSSP 71
           S+ P ++ S+ + P     QQ+ +     L GTC +P
Sbjct: 546 SLTPPSISSLMTPPSALTAQQKKKPRHSLLSGTCFTP 582


>At3g57510.1 68416.m06402 endo-polygalacturonase (ADPG1) identical
           to endo-polygalacturonase [Arabidopsis thaliana]
           GI:2597824
          Length = 431

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 9   QYVQILDLRCSPGFRVSQASAGE 77
           Q +QI DL C PG  +S  S G+
Sbjct: 274 QNLQIFDLTCGPGHGISIGSLGD 296


>At3g27720.1 68416.m03461 zinc finger protein-related contains
           Pfam:PF01485 IBR domain
          Length = 493

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +3

Query: 27  DLRCSPGFRVSQASAGELHVPCSCCIYR 110
           ++ CS G +   +   E H PCSC +++
Sbjct: 191 EVECSCGLQFCFSCLSESHSPCSCLMWK 218


>At1g74160.1 68414.m08589 expressed protein
          Length = 1030

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -1

Query: 190 SMRSMQPENMQSMQST-PGGRCTQQRPERYMQQLQGTCSSPAEAWLTRKPG 41
           S +S +P N Q ++ST PGGR  + + ++ +QQ+    S  +    T   G
Sbjct: 610 SSKSRKPSNQQLVESTSPGGR-RRPKGQKSLQQVDDQLSQASNESRTSSHG 659


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,987,142
Number of Sequences: 28952
Number of extensions: 92767
Number of successful extensions: 268
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)