Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31122
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity...    27   3.0  
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom...    26   3.9  
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |...    26   3.9  
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc...    25   9.0  
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    25   9.0  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    25   9.0  

>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ctf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +2

Query: 371 ISPIALTTSS-PPSEGGGTRGPALTVSRSRTANL 469
           I P+  +TSS P S+GGG   PA+  S S   NL
Sbjct: 118 IPPVLHSTSSLPASQGGGMPSPAI-YSSSMATNL 150


>SPAC16A10.08c |mug74|SPAC589.01c|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 285

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
 Frame = +1

Query: 151 GSRHFATFNPMKEFVRPVHDAHVHDEFERFKVKHQRQYASDLEHEKRLNIFRQSLRYIHS 330
           G +     + ++  +    D++   E E    K +++   + EHEK +   ++ L+ +HS
Sbjct: 201 GRKDIVKLSELRNCINSSKDSNQIQELENLLRKEKQR---NTEHEKIIRRMKKELKELHS 257

Query: 331 N-NRANRGF--TMSVNH-LADRTDDE 396
             N A + F   +S N  + D+ +DE
Sbjct: 258 QFNFAKKLFISALSANQDILDKMNDE 283


>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 649

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +1

Query: 169 TFNPMKEFVRPVHDAHVHDEFERFKVKHQRQYASDLEHEKRL 294
           TF  +  FV P        ++ + K+K  ++  S  +  KRL
Sbjct: 263 TFGTLVSFVEPTITGSEQSDYRQIKIKKSKKKKSKSDRRKRL 304


>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
           Uap56|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 246 DFETLELVVDMRVVDGPHELLHRVEGGEVSRAGPR 142
           D E + +V++  + D P   LHRV  G   R G +
Sbjct: 360 DIERVNIVINYDMPDSPDSYLHRV--GRAGRFGTK 392


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -3

Query: 623 PPLCRNSXPSXAPTVPNDQHEPH 555
           PP C  S  S   TVP   H P+
Sbjct: 191 PPYCFQSPVSPGATVPLQHHSPY 213


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 201  GPHELLHRVEGGEVSRAGPREPSAL 127
            GP  L   ++GG VSR   R+ SAL
Sbjct: 1335 GPTSLSSMLKGGSVSRTPSRQNSAL 1359


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,049,653
Number of Sequences: 5004
Number of extensions: 38854
Number of successful extensions: 148
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)