Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31118
(746 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0739 + 20584264-20584626,20586943-20587011,20587696-205880... 31 0.74
02_05_0440 - 29035974-29036356,29037977-29038133,29038260-290388... 31 0.97
08_02_0707 - 20212190-20214592 30 1.7
05_04_0272 + 19624898-19625071,19625909-19626370,19626471-196269... 30 2.2
06_03_0332 + 19652207-19652995 29 3.0
01_06_0777 + 31919196-31919909,31919984-31920082 29 3.9
03_06_0538 + 34591897-34593703,34595436-34595506,34596328-34598775 28 6.9
02_02_0136 + 7104633-7105247 28 6.9
01_01_0419 - 3146851-3147339,3148428-3148663,3148847-3149793,315... 28 6.9
01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,117... 28 6.9
12_02_1121 + 26233881-26234000,26234138-26234175,26235840-26236812 28 9.1
08_02_1556 - 27852247-27852738,27853005-27853197,27854006-278540... 28 9.1
05_01_0177 + 1231679-1231753,1232259-1232546,1232608-1232685,123... 28 9.1
03_05_0477 + 24707460-24707553,24707644-24707711,24707857-247079... 28 9.1
>08_02_0739 +
20584264-20584626,20586943-20587011,20587696-20588006,
20588447-20588648,20588887-20588958
Length = 338
Score = 31.5 bits (68), Expect = 0.74
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 578 RGHQEERSRCHHYDHRCHEYLNSSDSSR 661
+G+Q+E + Y HR HE LN++D R
Sbjct: 197 KGNQQEDDQSLFYSHRVHEVLNTNDERR 224
>02_05_0440 -
29035974-29036356,29037977-29038133,29038260-29038824,
29038866-29039191
Length = 476
Score = 31.1 bits (67), Expect = 0.97
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = -1
Query: 335 LAPPTGR-SGGFYRVLVGVRERFGSLRALPLRRGRGTALQSYSVGILATLLLFHRHM 168
L PP+GR SGG RV RER G R + +RRG G +++ G L+L R +
Sbjct: 344 LFPPSGRESGGGDRV---ARERRGGDRGVRMRRGMGMVDATHADGRRWLLILVAREI 397
>08_02_0707 - 20212190-20214592
Length = 800
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +2
Query: 587 QEERSRCHHYDHRCHEYLNSSDSSRETGE*TTRGLHSGRGVAAGLRLPFRS 739
+E S CH +DH H + + S+ +++G+ + + + A L +P S
Sbjct: 574 KENHSHCHGHDHHHHHHHDHSEHHQQSGDHAHQDISNISSDPAILEIPLNS 624
>05_04_0272 +
19624898-19625071,19625909-19626370,19626471-19626905,
19626992-19627237,19627318-19628085,19628245-19628417,
19629337-19629440,19629525-19630127,19630210-19630214
Length = 989
Score = 29.9 bits (64), Expect = 2.2
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Frame = -3
Query: 306 VLPRPGRREGEIRLPARSPSPTRPWYCAPVLL---RRHISYATVVSSAHEFIANLATKYP 136
+LP+ +G LP +P +RPW+ P L + H + +TV +S I N ++ +
Sbjct: 476 LLPQNSHSDG---LPL-APCQSRPWWSKPSFLMDHQLHPAPSTVTNSVVSRIKNSSSGWL 531
Query: 135 QLKSEASSLLDTHLTITTADITPTYH 58
S ++ L++ + +T +H
Sbjct: 532 NTVSNVAASASGKLSVPSGAVTAVFH 557
>06_03_0332 + 19652207-19652995
Length = 262
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = -3
Query: 270 RLPARSPSPTRPW 232
R PA SPSPTRPW
Sbjct: 222 RSPAMSPSPTRPW 234
>01_06_0777 + 31919196-31919909,31919984-31920082
Length = 270
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = -3
Query: 312 WRVLPRPGRREGEIRLPARSPSPTRPWYCAP 220
W L P R P+R+ P +PW C P
Sbjct: 55 WEPLGAPPRPAAAAASPSRAALPDKPWVCDP 85
>03_06_0538 + 34591897-34593703,34595436-34595506,34596328-34598775
Length = 1441
Score = 28.3 bits (60), Expect = 6.9
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = -1
Query: 302 YRVLVGVRERFGSLRA-LPLRRGRGTALQSYSVGILATLLLFHRHMNSL 159
Y+ + G R+R S+ A L G A+ S V ++A+LLL RH SL
Sbjct: 1074 YQTISGTRQRAMSIHANSALISGVSLAIFSLFVLLVASLLLICRHRRSL 1122
>02_02_0136 + 7104633-7105247
Length = 204
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +2
Query: 548 LLRQGAQGEDRGHQEERSRCHHYDHRCHEYLNSSDSSRETG 670
LL GAQG GH+ R R +L + S+ ETG
Sbjct: 7 LLGSGAQGRAVGHRRHRGSSSERSCRAPSHLPAPGSATETG 47
>01_01_0419 -
3146851-3147339,3148428-3148663,3148847-3149793,
3150258-3150356,3151128-3151501
Length = 714
Score = 28.3 bits (60), Expect = 6.9
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +3
Query: 270 ESLPHADQDAVEPATPTC-WWGKWSSMGCFKSLGGHRNESEDAKEQRRRNHAINQQL 437
E L H+ D +P T WG S M +++G R E +K QRR Q L
Sbjct: 574 EKLLHSVPDKFQPLISTIEQWGDVSEMTVTETIGRLRAFEESSKGQRRDKEGEQQLL 630
>01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,
1171148-1171398,1171442-1171687,1172220-1172415,
1172796-1172876,1172966-1173169,1173671-1173880,
1173953-1174174,1174437-1174480,1174974-1175052,
1175066-1175227,1175337-1175564,1175786-1175815,
1175905-1176273,1176356-1176571,1177202-1177683,
1177930-1177975
Length = 1352
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/46 (26%), Positives = 18/46 (39%)
Frame = +2
Query: 551 LRQGAQGEDRGHQEERSRCHHYDHRCHEYLNSSDSSRETGE*TTRG 688
+R G + GH R HH+ H +D R+ G+ G
Sbjct: 1303 VRNGKRPHKTGHHRHHHRHHHHHHDHRSSSEPNDKKRQDGQKALEG 1348
>12_02_1121 + 26233881-26234000,26234138-26234175,26235840-26236812
Length = 376
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 320 GRSGGFYRVLVGVRERFGSLRAL 252
G GG Y+V G+ E FG LR L
Sbjct: 84 GHYGGSYKVTKGLAEMFGDLRVL 106
>08_02_1556 -
27852247-27852738,27853005-27853197,27854006-27854070,
27854161-27854199,27854572-27854592,27854819-27855052,
27855420-27855504,27855953-27856026,27856516-27856647,
27856735-27856834,27857296-27857361,27857472-27857509,
27858013-27858219,27858378-27858427,27858871-27858940,
27859065-27859133,27859456-27859530,27860456-27860530,
27860887-27860934
Length = 710
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = +3
Query: 378 NESEDAKEQRRRNHAINQQLKQDRELYQATHRLLLLGAGESGKSTIVKQMRILHVN 545
N+ ++ + R + + L +D E+Y H ++LL E+G + V R+L V+
Sbjct: 13 NQIKEPRPPRSSSRGMEDFLLEDEEVYAQGHGVVLLNTDEAGILS-VTNFRLLFVS 67
>05_01_0177 +
1231679-1231753,1232259-1232546,1232608-1232685,
1233458-1233673,1233862-1233981,1234079-1234804
Length = 500
Score = 27.9 bits (59), Expect = 9.1
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = +3
Query: 639 LTPPIPLEKPENKPRVDYIQDVASQP 716
+ PP P+ + P+V+ ++D+A P
Sbjct: 463 MAPPSPMRRHSGPPKVEVVKDIAEPP 488
>03_05_0477 +
24707460-24707553,24707644-24707711,24707857-24707903,
24709188-24710160
Length = 393
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 320 GRSGGFYRVLVGVRERFGSLRAL 252
G GG Y+V G+ E FG LR L
Sbjct: 101 GHYGGSYKVTKGLAEMFGDLRVL 123
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,522,868
Number of Sequences: 37544
Number of extensions: 378791
Number of successful extensions: 1357
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1356
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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