Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31118
(746 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4844| Best HMM Match : G-alpha (HMM E-Value=3.6e-10) 108 4e-24
SB_30236| Best HMM Match : No HMM Matches (HMM E-Value=.) 80 2e-15
SB_8302| Best HMM Match : G-alpha (HMM E-Value=0) 64 1e-10
SB_977| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 2e-10
SB_19713| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 3e-09
SB_14105| Best HMM Match : G-alpha (HMM E-Value=0) 42 4e-04
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_5612| Best HMM Match : WD40 (HMM E-Value=4.4e-18) 28 7.0
SB_51371| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
>SB_4844| Best HMM Match : G-alpha (HMM E-Value=3.6e-10)
Length = 290
Score = 108 bits (260), Expect = 4e-24
Identities = 52/83 (62%), Positives = 62/83 (74%), Gaps = 1/83 (1%)
Frame = +3
Query: 486 GAGESGKSTIVKQMRILH-VNGFSXXXXXXXXXXXXXNVRDAIITITGAMSTLTPPIPLE 662
GAGESGKSTIVKQMRILH V+GF+ N+RDAI+TITGAMSTLTPP+ L
Sbjct: 156 GAGESGKSTIVKQMRILHDVHGFTELEKRQKIEDIKKNIRDAILTITGAMSTLTPPVKLA 215
Query: 663 KPENKPRVDYIQDVASQPDFDYP 731
P N+ R+DY+ +VA+ PDFDYP
Sbjct: 216 NPNNQFRLDYVHEVATAPDFDYP 238
>SB_30236| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 353
Score = 80.2 bits (189), Expect = 2e-15
Identities = 44/107 (41%), Positives = 63/107 (58%)
Frame = +3
Query: 384 SEDAKEQRRRNHAINQQLKQDRELYQATHRLLLLGAGESGKSTIVKQMRILHVNGFSXXX 563
SE+AKE++R N I +Q++QD+ + +LLLLG GESGKST +KQMRI+H G+S
Sbjct: 6 SEEAKERKRINAEIEKQIRQDKRNQRRELKLLLLGTGESGKSTSIKQMRIIHGQGYSDED 65
Query: 564 XXXXXXXXXXNVRDAIITITGAMSTLTPPIPLEKPENKPRVDYIQDV 704
N+ A+ ++T AM TL IP + N + YI+ V
Sbjct: 66 KRGYIPLVYQNIITAMHSLTRAMETL--KIPYKDSSNLEKASYIRTV 110
>SB_8302| Best HMM Match : G-alpha (HMM E-Value=0)
Length = 315
Score = 64.1 bits (149), Expect = 1e-10
Identities = 42/108 (38%), Positives = 55/108 (50%)
Frame = +3
Query: 411 RNHAINQQLKQDRELYQATHRLLLLGAGESGKSTIVKQMRILHVNGFSXXXXXXXXXXXX 590
R+ AI + LK + + +LLLLGAGESGKSTIVKQMRI+H +GFS
Sbjct: 15 RSKAIEKNLKLEGARAERDVKLLLLGAGESGKSTIVKQMRIIHDHGFSPEDYIQYRPLVF 74
Query: 591 XNVRDAIITITGAMSTLTPPIPLEKPENKPRVDYIQDVASQPDFDYPF 734
N +++TI AM L I E + DV ++ D PF
Sbjct: 75 SNTIYSLLTIIRAMDKLR--IDFENDARLMDAKLVFDVIARADDTEPF 120
>SB_977| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 765
Score = 63.7 bits (148), Expect = 2e-10
Identities = 36/86 (41%), Positives = 48/86 (55%)
Frame = +3
Query: 384 SEDAKEQRRRNHAINQQLKQDRELYQATHRLLLLGAGESGKSTIVKQMRILHVNGFSXXX 563
S + K R+ I++ L+ D E +LLLLGAGESGKSTIVKQM+I+H +G+S
Sbjct: 6 SAEDKAAAERSKMIDKNLRADGERAAREVKLLLLGAGESGKSTIVKQMKIIHEHGYSTEE 65
Query: 564 XXXXXXXXXXNVRDAIITITGAMSTL 641
N ++I I AM TL
Sbjct: 66 CTQYKQVVYSNTIQSMIAIIRAMGTL 91
>SB_19713| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 507
Score = 59.3 bits (137), Expect = 3e-09
Identities = 34/117 (29%), Positives = 59/117 (50%)
Frame = +3
Query: 384 SEDAKEQRRRNHAINQQLKQDRELYQATHRLLLLGAGESGKSTIVKQMRILHVNGFSXXX 563
+++ EQR ++ I++Q+ Q++ + ++LLLGAGESGKST +KQMRI++ F
Sbjct: 217 TQEEAEQRAQSQKIDKQIAQEKAQLRRQVKILLLGAGESGKSTFLKQMRIIYGKDFDADA 276
Query: 564 XXXXXXXXXXNVRDAIITITGAMSTLTPPIPLEKPENKPRVDYIQDVASQPDFDYPF 734
N+ + + A L I + P+N+ + I + + P D F
Sbjct: 277 LQEYKPVVYSNILKGMKVLADARRKLR--IDWDAPDNEMHAERILTLQAPPRIDTEF 331
>SB_14105| Best HMM Match : G-alpha (HMM E-Value=0)
Length = 320
Score = 42.3 bits (95), Expect = 4e-04
Identities = 21/55 (38%), Positives = 35/55 (63%)
Frame = +3
Query: 390 DAKEQRRRNHAINQQLKQDRELYQATHRLLLLGAGESGKSTIVKQMRILHVNGFS 554
+ K +R+ I+ L Q+RE +LL L +G SGKST +KQ++I++ +GF+
Sbjct: 15 ELKAAFKRSQHIDALLDQERERKSQEIQLLTLVSGNSGKSTFIKQLKIVYDDGFN 69
>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6753
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Frame = -2
Query: 583 SSIF--SLRSLSEKPLTCRMRICFTIVDFPDSPAPSRRSRCVAWYSSLSCL 437
S++F S L E R RIC + + SP P C Y S C+
Sbjct: 3331 SNVFTASFEKLGEVVQAIRDRICLDVNECDASPGPCVHGECSNNYGSFKCI 3381
>SB_5612| Best HMM Match : WD40 (HMM E-Value=4.4e-18)
Length = 736
Score = 28.3 bits (60), Expect = 7.0
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Frame = -3
Query: 348 PLMTTCPTNR*EWRVLPRPGRREGEIRLPARSPSPTRPWYCAPVLLRRHI-----SYATV 184
P T P +R +WRV PRP +R + LP PS +P+ L I S A
Sbjct: 177 PKTTEDPMDR-DWRVGPRPQQRSADAPLP-HDPSKESHVTASPINLDWRIRQPLDSDAVS 234
Query: 183 VSSAHEFIANLATK 142
V SA + +++ T+
Sbjct: 235 VGSAEDDRSSVGTR 248
>SB_51371| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1325
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 3/38 (7%)
Frame = +3
Query: 438 KQDRELYQATHRLLLLGAGESGKSTIVKQMR---ILHV 542
++DRE+ R+LLLG SGK+TI+K + +LH+
Sbjct: 13 EKDREM-----RILLLGLDNSGKTTILKSLASEDVLHI 45
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,582,579
Number of Sequences: 59808
Number of extensions: 397986
Number of successful extensions: 1381
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1377
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -