Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31118
         (746 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   4.0  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   5.3  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    21   9.3  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +1

Query: 52  SLVISGRDISCSDCQVSVKERRRLGLELW 138
           S V++ R+I+ S C     E+      +W
Sbjct: 328 SAVLAAREITSSSCSYMAHEKLSYAFSVW 356


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 17/41 (41%), Positives = 18/41 (43%)
 Frame = -3

Query: 297 RPGRREGEIRLPARSPSPTRPWYCAPVLLRRHISYATVVSS 175
           R G +E E RLP   P   R     P LL R IS  T   S
Sbjct: 627 RDGTQETEERLPPLPPKRIRKMPSMP-LLPRPISCHTTPDS 666


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 166 IHCKSSHKVSTTQVRGVFAP*HSLDNHYS*YH 71
           +H + S +      + V++  +SL NH S YH
Sbjct: 25  VHTRPSKEPICNICKRVYSSLNSLRNHKSIYH 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,135
Number of Sequences: 438
Number of extensions: 3499
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)