Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31118
(746 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g26300.1 68415.m03156 guanine nucleotide binding protein (G-p... 51 9e-07
At1g31930.2 68414.m03924 extra-large guanine nucleotide binding ... 32 0.46
At1g31930.1 68414.m03923 extra-large guanine nucleotide binding ... 32 0.46
At1g69890.1 68414.m08043 expressed protein contains Pfam profil... 31 0.81
At5g06670.1 68418.m00753 kinesin motor protein-related 29 2.5
At4g39850.1 68417.m05646 peroxisomal ABC transporter (PXA1) iden... 29 2.5
At3g55930.1 68416.m06215 RNA splicing factor-related similar to ... 29 3.3
At3g09070.1 68416.m01066 glycine-rich protein similar to hypothe... 29 3.3
At5g17670.1 68418.m02071 expressed protein 28 5.7
At4g32020.1 68417.m04558 expressed protein NuLL 28 5.7
At5g43210.1 68418.m05280 endo/excinuclease amino terminal domain... 28 7.6
At2g34590.1 68415.m04250 transketolase family protein similar to... 28 7.6
At1g30120.1 68414.m03681 pyruvate dehydrogenase E1 component bet... 28 7.6
At4g13350.2 68417.m02088 human Rev interacting-like protein-rela... 27 10.0
At4g13350.1 68417.m02087 human Rev interacting-like protein-rela... 27 10.0
At3g63100.1 68416.m07087 glycine-rich protein 27 10.0
At3g26100.2 68416.m03250 regulator of chromosome condensation (R... 27 10.0
At3g26100.1 68416.m03251 regulator of chromosome condensation (R... 27 10.0
At1g66170.1 68414.m07511 PHD finger family protein (MMD1) contai... 27 10.0
>At2g26300.1 68415.m03156 guanine nucleotide binding protein
(G-protein) alpha-1 subunit / GP-alpha-1 (GPA1)
identical to SP|P18064 Guanine nucleotide-binding
protein alpha-1 subunit (GP-alpha-1) {Arabidopsis
thaliana}
Length = 383
Score = 50.8 bits (116), Expect = 9e-07
Identities = 28/69 (40%), Positives = 39/69 (56%)
Frame = +3
Query: 345 MGCFKSLGGHRNESEDAKEQRRRNHAINQQLKQDRELYQATHRLLLLGAGESGKSTIVKQ 524
MG S H E D Q I ++++Q+ + + +LLLLGAGESGKSTI KQ
Sbjct: 1 MGLLCSRSRHHTEDTDENTQAAE---IERRIEQEAKAEKHIRKLLLLGAGESGKSTIFKQ 57
Query: 525 MRILHVNGF 551
+++L GF
Sbjct: 58 IKLLFQTGF 66
>At1g31930.2 68414.m03924 extra-large guanine nucleotide binding
protein, putative / G-protein, putative similar to
extra-large G-protein (XLG) [Arabidopsis thaliana]
GI:3201680; contains Pfam profile PF00503: G-protein
alpha subunit
Length = 848
Score = 31.9 bits (69), Expect = 0.46
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = +3
Query: 456 YQATHRLLLLGAGESGKSTIVKQMRILHVNGFS 554
++ +LLLLG SG STI KQ + L+ N FS
Sbjct: 427 HKKIQKLLLLGIEGSGTSTIFKQAKFLYGNKFS 459
>At1g31930.1 68414.m03923 extra-large guanine nucleotide binding
protein, putative / G-protein, putative similar to
extra-large G-protein (XLG) [Arabidopsis thaliana]
GI:3201680; contains Pfam profile PF00503: G-protein
alpha subunit
Length = 848
Score = 31.9 bits (69), Expect = 0.46
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = +3
Query: 456 YQATHRLLLLGAGESGKSTIVKQMRILHVNGFS 554
++ +LLLLG SG STI KQ + L+ N FS
Sbjct: 427 HKKIQKLLLLGIEGSGTSTIFKQAKFLYGNKFS 459
>At1g69890.1 68414.m08043 expressed protein contains Pfam profile:
PF04601 protein of unknown function (DUF569
Length = 279
Score = 31.1 bits (67), Expect = 0.81
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -3
Query: 720 SPAATPRPECNPRVVYSPVSREESEE 643
+P TP P P YSPVSR SE+
Sbjct: 158 APVTTPPPHRRPSYTYSPVSRTSSEK 183
>At5g06670.1 68418.m00753 kinesin motor protein-related
Length = 992
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -2
Query: 583 SSIFSLRSLSEKPLTCRMRICFTIVDFPDSPAPSRRSRCVAWYS 452
SS+ S L KPL + + T+ P SP R+ +AWY+
Sbjct: 48 SSVRSKPQLPPKPLQSKENVTVTVRFRPLSPREIRKGEEIAWYA 91
>At4g39850.1 68417.m05646 peroxisomal ABC transporter (PXA1) identical
to peroxisomal ABC transporter PXA1 GI:15320529 from
[Arabidopsis thaliana]; contains Pfam profile PF00005:
ABC transporter;
Length = 1337
Score = 29.5 bits (63), Expect = 2.5
Identities = 20/62 (32%), Positives = 28/62 (45%)
Frame = -3
Query: 246 PTRPWYCAPVLLRRHISYATVVSSAHEFIANLATKYPQLKSEASSLLDTHLTITTADITP 67
P RP+ C L R I Y A + A L T + +EA S+LD+HL ++
Sbjct: 1174 PQRPYTCLGTL-RDQIIYPLSKEEAEKRAAKLYTS-GESSTEAGSILDSHLKTILENVRL 1231
Query: 66 TY 61
Y
Sbjct: 1232 VY 1233
>At3g55930.1 68416.m06215 RNA splicing factor-related similar to
U4/U6-associated RNA splicing factor [Homo sapiens]
GI:2853287
Length = 437
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 578 RGHQEERSRCHHYDHRCHEYLNSSDSSRETG 670
RG ++ER R H+ R HE D E G
Sbjct: 13 RGDRDERDRTKHHHERSHEGSKRKDREEENG 43
>At3g09070.1 68416.m01066 glycine-rich protein similar to
hypothetical protein GB:AAD32765 [Arabidopsis thaliana]
Length = 685
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +3
Query: 327 WGKWSSMGCF--KSLGGHRNESEDAKEQRRR 413
WGKWS +G KS+ + E E+ +++ RR
Sbjct: 541 WGKWSILGLIYRKSVNKYEEEEEEEEDRYRR 571
>At5g17670.1 68418.m02071 expressed protein
Length = 309
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 282 EGEIRLPARSPSPTRPWYCAPVLLRRHISY 193
+G P S TRPWY +PV+++ I +
Sbjct: 277 DGVYHSPVGSDDETRPWYGSPVIVKDWIHH 306
>At4g32020.1 68417.m04558 expressed protein NuLL
Length = 181
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 309 RVLPRPGRREGEIRLPARSPSPTRPWYCAPVLL 211
R+ P PG G+IRL R S + P+Y PV +
Sbjct: 119 RIGPDPGLIPGQIRLSGRK-SKSAPFYAGPVTM 150
>At5g43210.1 68418.m05280 endo/excinuclease amino terminal
domain-containing protein contains Pfam domain PF01541:
Endo/excinuclease amino terminal domain
Length = 170
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 288 RREGEIRLPARSPSPTRPWYCAPVL 214
+ GEIR A++ S RPW CA ++
Sbjct: 82 QHNGEIRGGAKASSAGRPWLCACII 106
>At2g34590.1 68415.m04250 transketolase family protein similar to
SP|O66113 Pyruvate dehydrogenase E1 component, beta
subunit (EC 1.2.4.1). {Zymomonas mobilis}; contains Pfam
profiles PF02779: Transketolase, pyridine binding
domain, PF02780: Transketolase, C-terminal domain
Length = 406
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 320 GRSGGFYRVLVGVRERFGSLRAL 252
G GG Y+V G+ ++FG LR L
Sbjct: 114 GHYGGSYKVTKGLADKFGDLRVL 136
>At1g30120.1 68414.m03681 pyruvate dehydrogenase E1 component beta
subunit, chloroplast identical to pyruvate dehydrogenase
E1 beta subunit [Arabidopsis thaliana] GI:2454184;
identical to cDNA pyruvate dehydrogenase E1 beta subunit
mRNA, nuclear gene encoding plastid protein GI:2454183
Length = 406
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 320 GRSGGFYRVLVGVRERFGSLRAL 252
G GG Y+V G+ ++FG LR L
Sbjct: 114 GHYGGSYKVTKGLADKFGDLRVL 136
>At4g13350.2 68417.m02088 human Rev interacting-like protein-related
/ hRIP protein-related similar to SP|P52594
Nucleoporin-like protein RIP (HIV-1 Rev-binding protein)
(Rev interacting protein) (Rev/Rex activation
domain-binding protein) {Homo sapiens}; contains Pfam
profile PF01412: Putative GTPase activating protein for
Arf
Length = 602
Score = 27.5 bits (58), Expect = 10.0
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = -2
Query: 583 SSIFSLRSLSEKPLTCRMRICFTIVDFP---DSPAPS 482
+S+ SL S +EKP ++ +++DF ++PAPS
Sbjct: 261 TSLSSLMSTNEKPPEVKLETALSLIDFDTDFETPAPS 297
>At4g13350.1 68417.m02087 human Rev interacting-like protein-related
/ hRIP protein-related similar to SP|P52594
Nucleoporin-like protein RIP (HIV-1 Rev-binding protein)
(Rev interacting protein) (Rev/Rex activation
domain-binding protein) {Homo sapiens}; contains Pfam
profile PF01412: Putative GTPase activating protein for
Arf
Length = 602
Score = 27.5 bits (58), Expect = 10.0
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = -2
Query: 583 SSIFSLRSLSEKPLTCRMRICFTIVDFP---DSPAPS 482
+S+ SL S +EKP ++ +++DF ++PAPS
Sbjct: 261 TSLSSLMSTNEKPPEVKLETALSLIDFDTDFETPAPS 297
>At3g63100.1 68416.m07087 glycine-rich protein
Length = 199
Score = 27.5 bits (58), Expect = 10.0
Identities = 15/50 (30%), Positives = 18/50 (36%)
Frame = +2
Query: 569 GEDRGHQEERSRCHHYDHRCHEYLNSSDSSRETGE*TTRGLHSGRGVAAG 718
G DRGH R H + H + R+ G G H RG G
Sbjct: 87 GHDRGHGHGRGHGHGHGHGHRRHGRDHRHGRDRGHHRGHGHHHHRGHRRG 136
>At3g26100.2 68416.m03250 regulator of chromosome condensation
(RCC1) family protein weak similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 532
Score = 27.5 bits (58), Expect = 10.0
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = -3
Query: 693 CNPRVVYSPVSREESEELR 637
CN RV++ P++ EE +E++
Sbjct: 102 CNKRVIFKPMNEEERQEMK 120
>At3g26100.1 68416.m03251 regulator of chromosome condensation
(RCC1) family protein weak similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 432
Score = 27.5 bits (58), Expect = 10.0
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = -3
Query: 693 CNPRVVYSPVSREESEELR 637
CN RV++ P++ EE +E++
Sbjct: 2 CNKRVIFKPMNEEERQEMK 20
>At1g66170.1 68414.m07511 PHD finger family protein (MMD1) contains
Pfam profile: PF00628: PHD-finger
Length = 704
Score = 27.5 bits (58), Expect = 10.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 324 WWGKWSSMGCFKSLGGHRNESEDAKE 401
W+G+W C S G +NE E+A E
Sbjct: 207 WFGRWGYKFCCGSFGVTKNEYENAIE 232
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,235,274
Number of Sequences: 28952
Number of extensions: 276242
Number of successful extensions: 934
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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