Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31117
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi...   161   5e-41
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch...   161   5e-41
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|...   101   6e-23
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz...   101   6e-23
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M...   101   6e-23
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro...    62   6e-11
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb...    38   8e-04
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc...    37   0.003
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    31   0.17 
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom...    27   2.8  
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc...    27   2.8  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    25   8.5  

>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
           Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score =  161 bits (392), Expect = 5e-41
 Identities = 78/128 (60%), Positives = 91/128 (71%)
 Frame = +1

Query: 88  DTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVXXXXXXXXXX 267
           DTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV          
Sbjct: 21  DTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKR 80

Query: 268 XXXNYSTPXXXXXXXXXXXLAVLRFYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHY 447
               Y+TP           LAVL++YKV+++G + RLRREC    CGA  FMA  +DR Y
Sbjct: 81  KKKTYTTPKKIKHKHKKVELAVLKYYKVEDDGSVKRLRREC--PNCGASTFMANHKDRLY 138

Query: 448 CGKCHSTM 471
           CG+CH T+
Sbjct: 139 CGRCHLTL 146



 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 19/20 (95%), Positives = 19/20 (95%)
 Frame = +3

Query: 27 MQIFVKTLTGKTITLEVEPS 86
          MQIFVKTLTGKTITLEVE S
Sbjct: 1  MQIFVKTLTGKTITLEVESS 20


>SPAC589.10c |||ribomal-ubiquitin fusion protein
           Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score =  161 bits (392), Expect = 5e-41
 Identities = 78/128 (60%), Positives = 91/128 (71%)
 Frame = +1

Query: 88  DTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVXXXXXXXXXX 267
           DTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV          
Sbjct: 21  DTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKR 80

Query: 268 XXXNYSTPXXXXXXXXXXXLAVLRFYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHY 447
               Y+TP           LAVL++YKV+++G + RLRREC    CGA  FMA  +DR Y
Sbjct: 81  KKKTYTTPKKIKHKHKKVELAVLKYYKVEDDGSVKRLRREC--PNCGASTFMANHKDRLY 138

Query: 448 CGKCHSTM 471
           CG+CH T+
Sbjct: 139 CGRCHLTL 146



 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 19/20 (95%), Positives = 19/20 (95%)
 Frame = +3

Query: 27 MQIFVKTLTGKTITLEVEPS 86
          MQIFVKTLTGKTITLEVE S
Sbjct: 1  MQIFVKTLTGKTITLEVESS 20


>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
           Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 128

 Score =  101 bits (243), Expect = 6e-23
 Identities = 47/50 (94%), Positives = 50/50 (100%)
 Frame = +1

Query: 88  DTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 237
           DTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 21  DTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70



 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 19/20 (95%), Positives = 19/20 (95%)
 Frame = +3

Query: 27 MQIFVKTLTGKTITLEVEPS 86
          MQIFVKTLTGKTITLEVE S
Sbjct: 1  MQIFVKTLTGKTITLEVESS 20


>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
           Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 128

 Score =  101 bits (243), Expect = 6e-23
 Identities = 47/50 (94%), Positives = 50/50 (100%)
 Frame = +1

Query: 88  DTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 237
           DTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 21  DTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70



 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 19/20 (95%), Positives = 19/20 (95%)
 Frame = +3

Query: 27 MQIFVKTLTGKTITLEVEPS 86
          MQIFVKTLTGKTITLEVE S
Sbjct: 1  MQIFVKTLTGKTITLEVESS 20


>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 382

 Score =  101 bits (243), Expect = 6e-23
 Identities = 47/50 (94%), Positives = 50/50 (100%)
 Frame = +1

Query: 88  DTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 237
           DTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 21  DTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70



 Score =  101 bits (243), Expect = 6e-23
 Identities = 47/50 (94%), Positives = 50/50 (100%)
 Frame = +1

Query: 88  DTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 237
           DTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 97  DTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 146



 Score =  101 bits (243), Expect = 6e-23
 Identities = 47/50 (94%), Positives = 50/50 (100%)
 Frame = +1

Query: 88  DTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 237
           DTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 173 DTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 222



 Score =  101 bits (243), Expect = 6e-23
 Identities = 47/50 (94%), Positives = 50/50 (100%)
 Frame = +1

Query: 88  DTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 237
           DTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 249 DTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 298



 Score =  101 bits (243), Expect = 6e-23
 Identities = 47/50 (94%), Positives = 50/50 (100%)
 Frame = +1

Query: 88  DTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 237
           DTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 325 DTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 374



 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 19/20 (95%), Positives = 19/20 (95%)
 Frame = +3

Query: 27 MQIFVKTLTGKTITLEVEPS 86
          MQIFVKTLTGKTITLEVE S
Sbjct: 1  MQIFVKTLTGKTITLEVESS 20



 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 19/20 (95%), Positives = 19/20 (95%)
 Frame = +3

Query: 27  MQIFVKTLTGKTITLEVEPS 86
           MQIFVKTLTGKTITLEVE S
Sbjct: 77  MQIFVKTLTGKTITLEVESS 96



 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 19/20 (95%), Positives = 19/20 (95%)
 Frame = +3

Query: 27  MQIFVKTLTGKTITLEVEPS 86
           MQIFVKTLTGKTITLEVE S
Sbjct: 153 MQIFVKTLTGKTITLEVESS 172



 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 19/20 (95%), Positives = 19/20 (95%)
 Frame = +3

Query: 27  MQIFVKTLTGKTITLEVEPS 86
           MQIFVKTLTGKTITLEVE S
Sbjct: 229 MQIFVKTLTGKTITLEVESS 248



 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 19/20 (95%), Positives = 19/20 (95%)
 Frame = +3

Query: 27  MQIFVKTLTGKTITLEVEPS 86
           MQIFVKTLTGKTITLEVE S
Sbjct: 305 MQIFVKTLTGKTITLEVESS 324


>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
           protein modifier Ned8|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 78

 Score = 62.1 bits (144), Expect = 6e-11
 Identities = 24/50 (48%), Positives = 37/50 (74%)
 Frame = +1

Query: 88  DTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 237
           D +  +K ++++KEGIPP+QQRLI+AGKQ+ D +    Y+++  S LHLV
Sbjct: 21  DKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLV 70



 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +3

Query: 27 MQIFVKTLTGKTITLEVEPS 86
          M I VKTLTGK I L+++P+
Sbjct: 1  MLIKVKTLTGKEIELDIDPN 20


>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 368

 Score = 38.3 bits (85), Expect = 8e-04
 Identities = 15/42 (35%), Positives = 29/42 (69%)
 Frame = +1

Query: 94  IENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKE 219
           I  +K KIQ ++     +Q+LI++G+ L D +T+ +YNI+++
Sbjct: 24  ISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEYNIKEQ 65


>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 18/51 (35%), Positives = 29/51 (56%)
 Frame = +1

Query: 85  QDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 237
           + ++  +K  I     I   +QRLI+AG+ L+D  +L  Y IQ   ++HLV
Sbjct: 23  ESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYKIQDGHSIHLV 73


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -3

Query: 549 NPSYTAVASVSYRLEGTYLFVVVFEDHRAVTLPAV 445
           NP+YT     SY L  TYL    F++HR  +  AV
Sbjct: 144 NPAYTNSHQNSYSLNETYLSYDFFDNHRGASSSAV 178


>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
           Msp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 903

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 217 PSGYCSPRGYVHLPAAFQQRSTSVDWEGF 131
           PS +  PRG V+ P+  ++R + +   GF
Sbjct: 17  PSSFLKPRGLVYRPSQIRRRVSLLSLSGF 45


>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = +1

Query: 331 VLRFY-KVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHSTMVFKDDD 489
           V+R Y ++ +N +     R C  E      F  V++D H   KC + ++    D
Sbjct: 224 VIRCYLRLSDNPRAREALRHCLPEPLRDATFAQVLKDDHNTKKCLAQLLINLSD 277


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 139 PNQQRLIFAGKQLEDGRTLSDYNI 210
           PNQ     AGK+L+  R L DY+I
Sbjct: 476 PNQGDTRKAGKRLKYSRNLDDYHI 499


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,321,764
Number of Sequences: 5004
Number of extensions: 44186
Number of successful extensions: 122
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)