Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31117
(599 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.) 184 5e-47
SB_57838| Best HMM Match : No HMM Matches (HMM E-Value=.) 104 6e-23
SB_46051| Best HMM Match : ubiquitin (HMM E-Value=0) 104 6e-23
SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0) 104 6e-23
SB_28758| Best HMM Match : ubiquitin (HMM E-Value=1.5e-29) 91 8e-19
SB_20850| Best HMM Match : ubiquitin (HMM E-Value=0.00037) 74 8e-14
SB_41074| Best HMM Match : ubiquitin (HMM E-Value=2.3e-10) 42 5e-04
SB_59029| Best HMM Match : Pkinase (HMM E-Value=0) 35 0.044
SB_10325| Best HMM Match : ubiquitin (HMM E-Value=3.4e-05) 35 0.058
SB_25220| Best HMM Match : Ank (HMM E-Value=6.2e-11) 34 0.076
SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18) 32 0.31
SB_42868| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.54
SB_5154| Best HMM Match : zf-C2H2 (HMM E-Value=1.8) 31 0.54
SB_1967| Best HMM Match : ubiquitin (HMM E-Value=4.7e-12) 31 0.71
SB_56543| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_54480| Best HMM Match : Folate_rec (HMM E-Value=1.5) 28 5.0
SB_36411| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_35539| Best HMM Match : RVT_1 (HMM E-Value=1.7e-07) 28 6.6
SB_15135| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39) 28 6.6
SB_28983| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_28642| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39) 28 6.6
SB_50156| Best HMM Match : RVT_1 (HMM E-Value=7.2e-37) 27 8.8
SB_48126| Best HMM Match : RVT_1 (HMM E-Value=5.5e-39) 27 8.8
SB_39101| Best HMM Match : RVT_1 (HMM E-Value=2.4e-38) 27 8.8
SB_25140| Best HMM Match : RVT_1 (HMM E-Value=7.8e-38) 27 8.8
SB_46071| Best HMM Match : RVP (HMM E-Value=3e-05) 27 8.8
SB_45108| Best HMM Match : RVT_1 (HMM E-Value=4.9e-37) 27 8.8
SB_23675| Best HMM Match : zf-CCHC (HMM E-Value=0.00067) 27 8.8
SB_19158| Best HMM Match : zf-CCHC (HMM E-Value=0.00067) 27 8.8
SB_15324| Best HMM Match : RVP (HMM E-Value=8.1e-05) 27 8.8
SB_10983| Best HMM Match : RVP (HMM E-Value=3.8e-05) 27 8.8
SB_2074| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
>SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 184 bits (448), Expect = 5e-47
Identities = 91/130 (70%), Positives = 95/130 (73%)
Frame = +1
Query: 88 DTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVXXXXXXXXXX 267
DTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 21 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKR 80
Query: 268 XXXNYSTPXXXXXXXXXXXLAVLRFYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHY 447
NY+TP LAVL++YKVDENGKI RLRREC E CGAGVFMA DR Y
Sbjct: 81 KKKNYTTPKKIKHKKKKVKLAVLKYYKVDENGKITRLRRECPSESCGAGVFMASHFDRQY 140
Query: 448 CGKCHSTMVF 477
CGKC T VF
Sbjct: 141 CGKCCLTYVF 150
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +3
Query: 27 MQIFVKTLTGKTITLEVEPS 86
MQIFVKTLTGKTITLEVEPS
Sbjct: 1 MQIFVKTLTGKTITLEVEPS 20
>SB_57838| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 533
Score = 104 bits (249), Expect = 6e-23
Identities = 49/50 (98%), Positives = 50/50 (100%)
Frame = +1
Query: 88 DTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 237
DTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 21 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
Score = 104 bits (249), Expect = 6e-23
Identities = 49/50 (98%), Positives = 50/50 (100%)
Frame = +1
Query: 88 DTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 237
DTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 97 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 146
Score = 104 bits (249), Expect = 6e-23
Identities = 49/50 (98%), Positives = 50/50 (100%)
Frame = +1
Query: 88 DTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 237
DTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 173 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 222
Score = 104 bits (249), Expect = 6e-23
Identities = 49/50 (98%), Positives = 50/50 (100%)
Frame = +1
Query: 88 DTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 237
DTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 249 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 298
Score = 104 bits (249), Expect = 6e-23
Identities = 49/50 (98%), Positives = 50/50 (100%)
Frame = +1
Query: 88 DTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 237
DTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 325 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 374
Score = 104 bits (249), Expect = 6e-23
Identities = 49/50 (98%), Positives = 50/50 (100%)
Frame = +1
Query: 88 DTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 237
DTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 401 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 450
Score = 104 bits (249), Expect = 6e-23
Identities = 49/50 (98%), Positives = 50/50 (100%)
Frame = +1
Query: 88 DTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 237
DTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 477 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 526
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +3
Query: 27 MQIFVKTLTGKTITLEVEPS 86
MQIFVKTLTGKTITLEVEPS
Sbjct: 1 MQIFVKTLTGKTITLEVEPS 20
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +3
Query: 27 MQIFVKTLTGKTITLEVEPS 86
MQIFVKTLTGKTITLEVEPS
Sbjct: 77 MQIFVKTLTGKTITLEVEPS 96
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +3
Query: 27 MQIFVKTLTGKTITLEVEPS 86
MQIFVKTLTGKTITLEVEPS
Sbjct: 153 MQIFVKTLTGKTITLEVEPS 172
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +3
Query: 27 MQIFVKTLTGKTITLEVEPS 86
MQIFVKTLTGKTITLEVEPS
Sbjct: 229 MQIFVKTLTGKTITLEVEPS 248
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +3
Query: 27 MQIFVKTLTGKTITLEVEPS 86
MQIFVKTLTGKTITLEVEPS
Sbjct: 305 MQIFVKTLTGKTITLEVEPS 324
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +3
Query: 27 MQIFVKTLTGKTITLEVEPS 86
MQIFVKTLTGKTITLEVEPS
Sbjct: 381 MQIFVKTLTGKTITLEVEPS 400
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +3
Query: 27 MQIFVKTLTGKTITLEVEPS 86
MQIFVKTLTGKTITLEVEPS
Sbjct: 457 MQIFVKTLTGKTITLEVEPS 476
>SB_46051| Best HMM Match : ubiquitin (HMM E-Value=0)
Length = 381
Score = 104 bits (249), Expect = 6e-23
Identities = 49/50 (98%), Positives = 50/50 (100%)
Frame = +1
Query: 88 DTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 237
DTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 21 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
Score = 104 bits (249), Expect = 6e-23
Identities = 49/50 (98%), Positives = 50/50 (100%)
Frame = +1
Query: 88 DTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 237
DTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 97 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 146
Score = 104 bits (249), Expect = 6e-23
Identities = 49/50 (98%), Positives = 50/50 (100%)
Frame = +1
Query: 88 DTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 237
DTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 173 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 222
Score = 104 bits (249), Expect = 6e-23
Identities = 49/50 (98%), Positives = 50/50 (100%)
Frame = +1
Query: 88 DTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 237
DTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 249 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 298
Score = 104 bits (249), Expect = 6e-23
Identities = 49/50 (98%), Positives = 50/50 (100%)
Frame = +1
Query: 88 DTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 237
DTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 325 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 374
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +3
Query: 27 MQIFVKTLTGKTITLEVEPS 86
MQIFVKTLTGKTITLEVEPS
Sbjct: 1 MQIFVKTLTGKTITLEVEPS 20
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +3
Query: 27 MQIFVKTLTGKTITLEVEPS 86
MQIFVKTLTGKTITLEVEPS
Sbjct: 77 MQIFVKTLTGKTITLEVEPS 96
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +3
Query: 27 MQIFVKTLTGKTITLEVEPS 86
MQIFVKTLTGKTITLEVEPS
Sbjct: 153 MQIFVKTLTGKTITLEVEPS 172
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +3
Query: 27 MQIFVKTLTGKTITLEVEPS 86
MQIFVKTLTGKTITLEVEPS
Sbjct: 229 MQIFVKTLTGKTITLEVEPS 248
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +3
Query: 27 MQIFVKTLTGKTITLEVEPS 86
MQIFVKTLTGKTITLEVEPS
Sbjct: 305 MQIFVKTLTGKTITLEVEPS 324
>SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0)
Length = 147
Score = 104 bits (249), Expect = 6e-23
Identities = 49/50 (98%), Positives = 50/50 (100%)
Frame = +1
Query: 88 DTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 237
DTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 21 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
Score = 65.3 bits (152), Expect = 4e-11
Identities = 28/49 (57%), Positives = 40/49 (81%)
Frame = +1
Query: 88 DTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 234
DT+E+VK KIQ++EGIPP QRL++ ++L D R+L+DYNI++ S LHL
Sbjct: 96 DTVESVKEKIQNREGIPPKVQRLLYEEEELVDNRSLADYNIKQGSILHL 144
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +3
Query: 27 MQIFVKTLTGKTITLEVEPS 86
MQIFVKTLTGKTITLEVEPS
Sbjct: 1 MQIFVKTLTGKTITLEVEPS 20
>SB_28758| Best HMM Match : ubiquitin (HMM E-Value=1.5e-29)
Length = 142
Score = 90.6 bits (215), Expect = 8e-19
Identities = 42/43 (97%), Positives = 43/43 (100%)
Frame = +1
Query: 88 DTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQK 216
DTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQK
Sbjct: 99 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 141
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +3
Query: 27 MQIFVKTLTGKTITLEVEPS 86
MQIFVKTLTGKTITLEVEPS
Sbjct: 79 MQIFVKTLTGKTITLEVEPS 98
>SB_20850| Best HMM Match : ubiquitin (HMM E-Value=0.00037)
Length = 150
Score = 74.1 bits (174), Expect = 8e-14
Identities = 34/35 (97%), Positives = 35/35 (100%)
Frame = +1
Query: 133 IPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 237
IPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 2 IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 36
>SB_41074| Best HMM Match : ubiquitin (HMM E-Value=2.3e-10)
Length = 333
Score = 41.5 bits (93), Expect = 5e-04
Identities = 22/49 (44%), Positives = 28/49 (57%)
Frame = +1
Query: 91 TIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 237
TI VK I+ K G P +QQRL+F G+ L D T I +TLHL+
Sbjct: 93 TIIEVKYLIEAKGGYPKDQQRLVFNGQVLSDEDTFEKVGIFAGATLHLI 141
>SB_59029| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 1023
Score = 35.1 bits (77), Expect = 0.044
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Frame = +1
Query: 88 DTIENVKAKIQ---DKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKES 222
+T+ +K KI+ K+ P +LI+AGK L D L +YNI ++S
Sbjct: 87 ETVLKLKQKIEADKGKDAYPHGNIKLIYAGKILNDDNPLKEYNIDEKS 134
>SB_10325| Best HMM Match : ubiquitin (HMM E-Value=3.4e-05)
Length = 198
Score = 34.7 bits (76), Expect = 0.058
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +1
Query: 124 KEGIPPNQQRLIFAGKQLEDGRTLSDYN 207
+EGIP +QRLIF GK L+D + L +++
Sbjct: 19 EEGIPAERQRLIFKGKVLQDEKKLKEFD 46
>SB_25220| Best HMM Match : Ank (HMM E-Value=6.2e-11)
Length = 744
Score = 34.3 bits (75), Expect = 0.076
Identities = 16/38 (42%), Positives = 26/38 (68%)
Frame = +1
Query: 103 VKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQK 216
+K++I+ K GIP + QRL F K+L D TL+ N+++
Sbjct: 32 LKSRIELKTGIPGDIQRLHFMNKELYDDATLAKVNLKQ 69
>SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18)
Length = 796
Score = 32.3 bits (70), Expect = 0.31
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +1
Query: 130 GIPPNQQRLIFAGKQLEDGRTLSDYN 207
GIP +QRLIF GK L+D + L +++
Sbjct: 1 GIPAERQRLIFKGKVLQDEKKLKEFD 26
>SB_42868| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1353
Score = 31.5 bits (68), Expect = 0.54
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 91 TIENVKAKIQDKEGIPPNQQRLIFA-GKQLEDGRTLSDYNIQKESTLHL 234
T+ ++K + +K G+ + RL+ GK++ D L DYNI T+ L
Sbjct: 86 TVGDLKTMVTNKTGLHVSVFRLVIPEGKEMFDCNLLKDYNISTGDTIRL 134
>SB_5154| Best HMM Match : zf-C2H2 (HMM E-Value=1.8)
Length = 180
Score = 31.5 bits (68), Expect = 0.54
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +3
Query: 51 TGKTITLEVEPSGYHRECES*NSRQRGNPSQSTEVDLCWKAAGRWTYPLGLQY 209
T + +E + Y +E E + RQR +S E D+C K R+T Y
Sbjct: 29 TDDQLRIEENSTEYTQESEGLDERQRARGKKSFECDICGKCFSRFTITTKYNY 81
>SB_1967| Best HMM Match : ubiquitin (HMM E-Value=4.7e-12)
Length = 348
Score = 31.1 bits (67), Expect = 0.71
Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Frame = +1
Query: 94 IENVKAKIQDKEGIPPNQQRLIFAGKQLED-GRTLSDYNIQKESTLHLV 237
+EN +A ++ + G+P ++ L G QL D +TL+ Y++++ + +V
Sbjct: 23 VENFRALLEFESGVPASEISLYHDGVQLSDLKKTLTAYSVKENDVILMV 71
>SB_56543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1076
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 91 TIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQK 216
TIE ++ ++ DK G PP QR I K + +L +++
Sbjct: 57 TIEKLQNEVADKYGFPPKVQRWIIGKKMAKPNESLLQCKVRE 98
>SB_54480| Best HMM Match : Folate_rec (HMM E-Value=1.5)
Length = 635
Score = 28.3 bits (60), Expect = 5.0
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 355 ENGKIHRLRRECTGEQC 405
+ G+IH L++EC G QC
Sbjct: 106 DGGEIHNLQQECIGSQC 122
>SB_36411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 654
Score = 27.9 bits (59), Expect = 6.6
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -3
Query: 450 AVVTVLHHRHEHSGA 406
A++TV+HHRH H A
Sbjct: 525 AIITVIHHRHHHHPA 539
>SB_35539| Best HMM Match : RVT_1 (HMM E-Value=1.7e-07)
Length = 1105
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +3
Query: 123 QRGNPSQSTEVDLCWKAAGRWTYPLGLQYPEGIHPPPGVEAS 248
QRG S+ T + W+ +G + L IHPP V S
Sbjct: 299 QRGVSSRKTMISKAWQVSGVYHITLDANVTPVIHPPRRVAIS 340
>SB_15135| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39)
Length = 794
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 343 YKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRH 444
YK D GK+ L+R C ++C ++ V D +
Sbjct: 364 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVDNN 397
>SB_28983| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 951
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +1
Query: 343 YKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHS 465
YK D GK+ L+R C ++C + + C +C S
Sbjct: 515 YKCDNCGKVGHLKRVCQSKECKKXXXXQGGKPKTACHRCGS 555
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 343 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 438
YK D GK+ L+R C ++C ++ V D
Sbjct: 568 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 599
>SB_28642| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39)
Length = 1750
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 343 YKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRH 444
YK D GK+ L+R C ++C ++ V D +
Sbjct: 207 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVDNN 240
>SB_50156| Best HMM Match : RVT_1 (HMM E-Value=7.2e-37)
Length = 493
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 343 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 438
YK D GK+ L+R C ++C ++ V D
Sbjct: 63 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 94
>SB_48126| Best HMM Match : RVT_1 (HMM E-Value=5.5e-39)
Length = 1510
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 343 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 438
YK D GK+ L+R C ++C ++ V D
Sbjct: 229 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 260
>SB_39101| Best HMM Match : RVT_1 (HMM E-Value=2.4e-38)
Length = 856
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 343 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 438
YK D GK+ L+R C ++C ++ V D
Sbjct: 372 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 403
>SB_25140| Best HMM Match : RVT_1 (HMM E-Value=7.8e-38)
Length = 1425
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 343 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 438
YK D GK+ L+R C ++C ++ V D
Sbjct: 898 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 929
>SB_46071| Best HMM Match : RVP (HMM E-Value=3e-05)
Length = 403
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 343 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 438
YK D GK+ L+R C ++C ++ V D
Sbjct: 229 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 260
>SB_45108| Best HMM Match : RVT_1 (HMM E-Value=4.9e-37)
Length = 1122
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 343 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 438
YK D GK+ L+R C ++C ++ V D
Sbjct: 245 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 276
>SB_23675| Best HMM Match : zf-CCHC (HMM E-Value=0.00067)
Length = 342
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 343 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 438
YK D GK+ L+R C ++C ++ V D
Sbjct: 202 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 233
>SB_19158| Best HMM Match : zf-CCHC (HMM E-Value=0.00067)
Length = 369
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 343 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 438
YK D GK+ L+R C ++C ++ V D
Sbjct: 229 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 260
>SB_15324| Best HMM Match : RVP (HMM E-Value=8.1e-05)
Length = 415
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 343 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 438
YK D GK+ L+R C ++C ++ V D
Sbjct: 66 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 97
>SB_10983| Best HMM Match : RVP (HMM E-Value=3.8e-05)
Length = 717
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 343 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 438
YK D GK+ L+R C ++C ++ V D
Sbjct: 268 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 299
>SB_2074| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1266
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 343 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 438
YK D GK+ L+R C ++C ++ V D
Sbjct: 428 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 459
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,934,734
Number of Sequences: 59808
Number of extensions: 358853
Number of successful extensions: 963
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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