Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31113
(698 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 30 0.28
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 30 0.37
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 29 0.64
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 28 1.1
SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces pombe... 27 2.0
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe... 27 2.0
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 2.6
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 27 3.4
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 4.5
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 26 4.5
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 26 4.5
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb... 26 6.0
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S... 26 6.0
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 26 6.0
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 7.9
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 30.3 bits (65), Expect = 0.28
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +2
Query: 515 PTLKKVSKYENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEEDKEKKPDW 664
PT KK + ++ K + ++ +E N + VK + L+ ++EK P W
Sbjct: 531 PTAKKNNSFKPKLFRRSRELSEKLCNNWSERVKSPSYQLKVREREKLPAW 580
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 29.9 bits (64), Expect = 0.37
Identities = 14/56 (25%), Positives = 29/56 (51%)
Frame = +2
Query: 329 GKPKNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDL 496
G ID++ +++KR Y ++ ++ LE ++R + EISD +++ L
Sbjct: 837 GSDNRIDESELNSVKRSLLKYENKLQIIKSSSSGLEEQMQRINSEISDKRNELESL 892
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 29.1 bits (62), Expect = 0.64
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +2
Query: 389 YHERIARLEDEKFDLEYIVKRKDMEISDLNS---QVNDLRGKFVKPTLKKVSKYENKFAK 559
+H+ + +DE Y++ K ME +L+ QVN + K +K VS + N +A+
Sbjct: 578 FHQLVFSADDEYLASVYLIYLKQMETKNLSEEKPQVNKIVKKILKKYDSSVSVW-NTYAQ 636
Query: 560 LQKKAAEF 583
L+ + F
Sbjct: 637 LEHLSGAF 644
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/58 (27%), Positives = 32/58 (55%)
Frame = +2
Query: 371 KRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPTLKKVSKYE 544
+R+C+ + + + + +DL++ E S L+ QVNDL + K T +K+S+ +
Sbjct: 897 QRLCEGRTKELLNSQQKLYDLKHSYSSVMTEKSKLSDQVNDLTEQ-AKITQRKLSEVQ 953
>SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 306
Score = 27.5 bits (58), Expect = 2.0
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +2
Query: 530 VSKYENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEE-DKEKK 655
+ K +NK + Q+ + +N+ K+ ++KE EEE D EKK
Sbjct: 1 MGKIKNKIVRQQQYMKALHQKNKDKLERRKERAKEEEKDPEKK 43
>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 338 KNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKD 457
+NI D++ED I ++ Y + A DE+ E+ + KD
Sbjct: 435 ENIVDSSEDIINQIASQYMDDRAFETDEEESTEFQITTKD 474
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.1 bits (57), Expect = 2.6
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +2
Query: 446 KRKDMEISDLNSQVNDLRGKFVKPTLKK-VSKYENKFAKLQKKAAEFNFRNQLKVVKKKE 622
K+ D I+ S + G+ + P L + + +E++F Q+ AE+ + Q + + +
Sbjct: 1368 KQTDTGITHFRSGMTT-NGEHLIPNLYRYIQPWESEFIDSQRVWAEYAMKRQEALQQNRR 1426
Query: 623 FTLEEEDKEKKPDWSKGKP 679
TLE + + W +G P
Sbjct: 1427 LTLE----DLEDSWDRGIP 1441
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 584 NFRNQLKVVKKKEFTLEEEDKEKKPDWSKG 673
+FRNQ+K ++ L E+ KE W +G
Sbjct: 1070 DFRNQIKSQTERILVLREKKKEDPISWMEG 1099
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 26.2 bits (55), Expect = 4.5
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Frame = +2
Query: 410 LEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPTLK-KVSKYENKFAKLQKK-AAEF 583
LE + L + ++KD +I +L ++NDL + TLK E K + K+ AA
Sbjct: 149 LEKQVKTLHDLNEQKDKKIKELKERINDLTYDY--ETLKANADDSEGKQTLVSKREAALE 206
Query: 584 NFRNQLKV----VKKKEFTLE-EEDKEKK 655
F+++L + + K+E + +ED KK
Sbjct: 207 EFQSKLLIRENEINKRELKMNGKEDDLKK 235
>SPAPB8E5.07c |||ribosome biogenesis protein
Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1163
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 207 KPFFAFLALEASSMRLRTSARLRSISACL 121
K FF L E+ +RL+T+ + S+ CL
Sbjct: 325 KAFFTLLESESMEIRLQTATTICSVIGCL 353
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 26.2 bits (55), Expect = 4.5
Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Frame = +2
Query: 449 RKDMEISDLNSQVNDLRGKFVKPTLKKVS-KYENKFAKLQKKAAEFNFRNQLKVVKKKEF 625
R ++E +L QVN+L+G V P S ++ N ++ KA ++Q+ K K F
Sbjct: 1423 RLNLEKHNLEKQVNELKGAEVSPQPTGQSLQHVNLAHAIELKA----LKDQINSEKAKMF 1478
Query: 626 TLEEEDKEKKPDWSK 670
+++ + ++++ + K
Sbjct: 1479 SVQVQYEKREQELQK 1493
>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 424
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +2
Query: 359 EDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVN 490
ED+ + D+H A E+EK + K ME+ ++N V+
Sbjct: 23 EDSNRGTITDFHIETANNEEEKDANVILNKSVKMEVEEVNGHVD 66
>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -2
Query: 436 FQIEFFIFKTSDAFMVVFANPLNSIFVGVVNVLRFTAPLLD 314
+ +++ + K + M V +PL S F+ +N LRF + D
Sbjct: 781 YLLKYSLGKGAKTLMFVNVSPLKSQFMDTLNSLRFATKVND 821
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +2
Query: 389 YHERIARLEDEKFDLEYIVKRKDMEISDLNSQV 487
+HE I +L+D + +L +++K++ IS L V
Sbjct: 599 FHESINKLQDREKELTSNLEKKNLVISSLRETV 631
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.4 bits (53), Expect = 7.9
Identities = 19/92 (20%), Positives = 36/92 (39%)
Frame = +2
Query: 368 IKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPTLKKVSKYEN 547
+K + H ++ E + E K I + + ++ + K VK ++ + +
Sbjct: 376 LKESNRTIHSQLTDAESKLSSFEQENKSLKGSIDEYQNNLSS-KDKMVKQVSSQLEEARS 434
Query: 548 KFAKLQKKAAEFNFRNQLKVVKKKEFTLEEED 643
A K AE N + K K+F E+D
Sbjct: 435 SLAHATGKLAEINSERDFQNKKIKDFEKIEQD 466
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,109,876
Number of Sequences: 5004
Number of extensions: 35396
Number of successful extensions: 196
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -