Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31112
(616 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g45775.2 68418.m05629 60S ribosomal protein L11 (RPL11D) 259 1e-69
At4g18730.1 68417.m02768 60S ribosomal protein L11 (RPL11C) 259 1e-69
At3g58700.1 68416.m06542 60S ribosomal protein L11 (RPL11B) ribo... 259 1e-69
At2g42740.1 68415.m05293 60S ribosomal protein L11 (RPL11A) 258 2e-69
At5g45775.1 68418.m05628 60S ribosomal protein L11 (RPL11D) 257 4e-69
At4g01310.1 68417.m00171 ribosomal protein L5 family protein con... 48 4e-06
At1g04840.1 68414.m00480 pentatricopeptide (PPR) repeat-containi... 37 0.012
At4g30990.1 68417.m04398 expressed protein ; expression supporte... 29 1.9
At4g26330.1 68417.m03786 subtilase family protein contains simil... 29 2.4
At3g13880.1 68416.m01754 pentatricopeptide (PPR) repeat-containi... 29 3.2
At4g14280.1 68417.m02201 hypothetical protein 28 5.7
At3g55160.1 68416.m06126 expressed protein 28 5.7
At4g32260.1 68417.m04590 ATP synthase family contains Pfam profi... 27 7.5
At3g06210.1 68416.m00714 expressed protein contains Prosite PS00... 27 7.5
At2g02980.1 68415.m00250 pentatricopeptide (PPR) repeat-containi... 27 7.5
At4g12230.1 68417.m01940 esterase/lipase/thioesterase family pro... 27 9.9
At4g00670.1 68417.m00092 remorin family protein contains Pfam do... 27 9.9
At2g48100.2 68415.m06021 exonuclease family protein contains Pfa... 27 9.9
At2g48100.1 68415.m06020 exonuclease family protein contains Pfa... 27 9.9
>At5g45775.2 68418.m05629 60S ribosomal protein L11 (RPL11D)
Length = 182
Score = 259 bits (634), Expect = 1e-69
Identities = 123/163 (75%), Positives = 139/163 (85%)
Frame = +3
Query: 54 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 233
N MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA
Sbjct: 9 NPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIA 68
Query: 234 VHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLD 413
+ TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+D
Sbjct: 69 CYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMD 128
Query: 414 FYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDG 542
FYVVL RPG+ VA RRR +VG HR+TK+DAMKWFQ KY+G
Sbjct: 129 FYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEG 171
>At4g18730.1 68417.m02768 60S ribosomal protein L11 (RPL11C)
Length = 182
Score = 259 bits (634), Expect = 1e-69
Identities = 123/163 (75%), Positives = 139/163 (85%)
Frame = +3
Query: 54 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 233
N MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA
Sbjct: 9 NPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIA 68
Query: 234 VHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLD 413
+ TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+D
Sbjct: 69 CYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMD 128
Query: 414 FYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDG 542
FYVVL RPG+ VA RRR +VG HR+TK+DAMKWFQ KY+G
Sbjct: 129 FYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEG 171
>At3g58700.1 68416.m06542 60S ribosomal protein L11 (RPL11B)
ribosomal protein L11, cytosolic, Arabidopsis thaliana,
PIR:S49033
Length = 182
Score = 259 bits (634), Expect = 1e-69
Identities = 123/163 (75%), Positives = 139/163 (85%)
Frame = +3
Query: 54 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 233
N MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA
Sbjct: 9 NPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIA 68
Query: 234 VHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLD 413
+ TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+D
Sbjct: 69 CYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMD 128
Query: 414 FYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDG 542
FYVVL RPG+ VA RRR +VG HR+TK+DAMKWFQ KY+G
Sbjct: 129 FYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEG 171
>At2g42740.1 68415.m05293 60S ribosomal protein L11 (RPL11A)
Length = 172
Score = 258 bits (632), Expect = 2e-69
Identities = 122/161 (75%), Positives = 138/161 (85%)
Frame = +3
Query: 60 MRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVH 239
MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA +
Sbjct: 1 MRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACY 60
Query: 240 CTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFY 419
TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+DFY
Sbjct: 61 VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 120
Query: 420 VVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDG 542
VVL RPG+ VA RRR +VG HR+TK+DAMKWFQ KY+G
Sbjct: 121 VVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEG 161
>At5g45775.1 68418.m05628 60S ribosomal protein L11 (RPL11D)
Length = 172
Score = 257 bits (630), Expect = 4e-69
Identities = 122/161 (75%), Positives = 138/161 (85%)
Frame = +3
Query: 60 MRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVH 239
MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA +
Sbjct: 1 MRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACY 60
Query: 240 CTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFY 419
TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+DFY
Sbjct: 61 VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 120
Query: 420 VVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDG 542
VVL RPG+ VA RRR +VG HR+TK+DAMKWFQ KY+G
Sbjct: 121 VVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEG 161
>At4g01310.1 68417.m00171 ribosomal protein L5 family protein
contains Pfam profiles PF00673: ribosomal L5P family
C-terminus, PF00281: ribosomal protein L5
Length = 262
Score = 48.4 bits (110), Expect = 4e-06
Identities = 30/130 (23%), Positives = 69/130 (53%), Gaps = 10/130 (7%)
Frame = +3
Query: 54 NVMRNLHIRKLCLNICVGESGDR---LTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNE 224
N+ + ++K+ +N +G++ L A K + +TGQ+P+ ++AR ++ +F IR ++
Sbjct: 79 NIHQVPKVQKIVVNCGIGDAAQNDKGLEAAMKDIALITGQKPIKTRARASIATFKIREDQ 138
Query: 225 KIAVHCTVRGAKAEEILERGL-----KVREYE-LRRDNFSATGNFGFGIQEH-IDLGIKY 383
+ + T+RG L+R + + R+++ + +F GN+ G+++ + I++
Sbjct: 139 PLGIAVTLRGDVMYSFLDRLINLALPRTRDFQGVSPSSFDGNGNYSIGVKDQGVFPEIRF 198
Query: 384 DPSIGIYGLD 413
D G+D
Sbjct: 199 DAVGKTRGMD 208
>At1g04840.1 68414.m00480 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 665
Score = 36.7 bits (81), Expect = 0.012
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Frame = +3
Query: 267 EILERGLKVREYELRR--DNFSATGNFGFGIQEH---IDLGIKYDPSIGIYGLDFYVVLG 431
E+LE+GLK EY + S +G G GI+ H +D GIK D +IG +D Y G
Sbjct: 283 EMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAIGTALVDMYAKCG 342
>At4g30990.1 68417.m04398 expressed protein ; expression supported
by MPSS
Length = 2138
Score = 29.5 bits (63), Expect = 1.9
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Frame = -3
Query: 239 MDSNLFIT-TDTKRPHCIPSLGKYRLLSCELLQHLGGTS----QPVTGFTNTDVQAKLSD 75
+DS+L I T R H S GKY+L+ L L GT+ +TG ++D++ LS
Sbjct: 465 VDSSLLICFKKTLRQHLAVSDGKYQLMIHSFLHSLLGTTLRSCYKMTGINHSDLEEALSF 524
Query: 74 MK 69
K
Sbjct: 525 AK 526
>At4g26330.1 68417.m03786 subtilase family protein contains
similarity to SBT1, a subtilase from tomato plants
GI:1771160 from [Lycopersicon esculentum]
Length = 746
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = -1
Query: 343 PKLPVAEKLSRRNSYSLTFKPLSRISSALAPRTVQWTAIFSLRRIPKDRTVYLA 182
P++ V K + +SY +TFKP S + WT L R+ V+L+
Sbjct: 687 PRILVFSKCQQEHSYYVTFKPTEIFSGRYVFGEIMWTN--GLHRVRSPVVVFLS 738
>At3g13880.1 68416.m01754 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 748
Score = 28.7 bits (61), Expect = 3.2
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +3
Query: 264 EEILERGLKVREYELRRDNFSATGNFGF-GIQEHIDLGIKYDPSIGIYGLDFYVVL 428
E+ +E L+ RE L+ D F+ G GF G + +DLG + + GL V L
Sbjct: 130 EQAMELFLEAREANLKLDKFTYAGALGFCGERCDLDLGELLHGLVVVNGLSQQVFL 185
>At4g14280.1 68417.m02201 hypothetical protein
Length = 798
Score = 27.9 bits (59), Expect = 5.7
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 361 TLTWVSSTIPQLEFMDWTFTS 423
T TW SS +P L + W F S
Sbjct: 167 TRTWKSSDVPMLPYTGWVFVS 187
>At3g55160.1 68416.m06126 expressed protein
Length = 2149
Score = 27.9 bits (59), Expect = 5.7
Identities = 19/91 (20%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Frame = +1
Query: 145 WSNSQDNS----LYFPR--LGIQCGLLVSVVMKRLLSIVQSEELKQKKSLRGV*KSENMN 306
W ++NS L+FP GI +V +++ +V S +++ + + EN++
Sbjct: 833 WDRLRENSFRILLHFPTPFTGISSEDMVQIIIPWAKQLVCSPRVRESDA-----ECENID 887
Query: 307 CGVTTSPPRVILASVFKNTLTWVSSTIPQLE 399
C S P+ + K+ + W+ +++ + E
Sbjct: 888 CRNQNSKPKYPVVEYIKSLIQWLDASVTEGE 918
>At4g32260.1 68417.m04590 ATP synthase family contains Pfam profile:
PF00430 ATP synthase B/B' CF(0); identical to cDNA
chloroplast ATP synthase beta chain precursor (atpG)
GI:5730140
Length = 219
Score = 27.5 bits (58), Expect = 7.5
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Frame = -1
Query: 307 NSYSLTFKPLSRISSALAPRTVQWTAIFSLRRIPKDRTVYLALENTGCCPVSC-SNTLAA 131
NS + KPL +SS P VQ L +IPK T L + S + +LA
Sbjct: 4 NSIMASSKPLISLSSNQQPNRVQIPKFAKLPQIPKSLTSSTDLRSKALSLSSATAKSLAL 63
Query: 130 RVSLSPDSPTQMFKQSFL 77
+ +P S + +++ L
Sbjct: 64 IAAFAPPSMAEAMEKAQL 81
>At3g06210.1 68416.m00714 expressed protein contains Prosite
PS00616: Histidine acid phosphatases phosphohistidine
signature;
Length = 840
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +1
Query: 310 GVTTSPPRVILASVF--KNTLTWVSSTIPQLEFMDWTFTSYLAGQV 441
G+ + R+ +F + TLTW +S +P L + W + S ++
Sbjct: 182 GLREATTRIGRQEIFDRRTTLTWKNSEVPLLPYARWLYISSYVSRI 227
>At2g02980.1 68415.m00250 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 603
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -1
Query: 271 ISSALAPRTVQWTAIFSLRRIPKDRTVYLALENTGCCPVSCSNTL 137
I S L R +W + SLR++ KDR A++ GC + +N +
Sbjct: 438 ILSNLYARNKKWEYVDSLRKVMKDRK---AVKVPGCSSIEVNNVV 479
>At4g12230.1 68417.m01940 esterase/lipase/thioesterase family
protein low similarity to
2-hydroxy-6-ketonona-2,4-dienedoic acid hydrolase; OhpC
[Rhodococcus sp.] GI:8926386; contains Interpro entry
IPR000379
Length = 392
Score = 27.1 bits (57), Expect = 9.9
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -3
Query: 545 DTIIFLLEPLHSIFLCEAVGKSHFSCLTPSVCY 447
DTI L L+++ L + G+ + SC+ ++CY
Sbjct: 343 DTIQLLSSSLNNLILVQLAGEVYQSCVVFTLCY 375
>At4g00670.1 68417.m00092 remorin family protein contains Pfam
domain, PF03763: Remorin, C-terminal region
Length = 116
Score = 27.1 bits (57), Expect = 9.9
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +3
Query: 216 RNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATG 335
RNEK AVH + KA+ R ++ + E F A G
Sbjct: 66 RNEKAAVHAKAQKKKADVQTRRAQEILDAEEAAARFQAAG 105
>At2g48100.2 68415.m06021 exonuclease family protein contains Pfam
domain PF00929: exonuclease
Length = 344
Score = 27.1 bits (57), Expect = 9.9
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 53 KCNAESSYQKALLEHLCW 106
K NAE YQK+ E+ CW
Sbjct: 319 KMNAEELYQKSTSEYRCW 336
>At2g48100.1 68415.m06020 exonuclease family protein contains Pfam
domain PF00929: exonuclease
Length = 344
Score = 27.1 bits (57), Expect = 9.9
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 53 KCNAESSYQKALLEHLCW 106
K NAE YQK+ E+ CW
Sbjct: 319 KMNAEELYQKSTSEYRCW 336
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,550,114
Number of Sequences: 28952
Number of extensions: 270361
Number of successful extensions: 755
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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