Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31111
         (703 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8NKN5 Cluster: Putative uncharacterized protein; n=1; ...    35   2.2  
UniRef50_UPI0000E4958A Cluster: PREDICTED: similar to endonuclea...    34   2.9  
UniRef50_Q54GS4 Cluster: Putative uncharacterized protein; n=1; ...    34   3.9  
UniRef50_UPI0000E48997 Cluster: PREDICTED: similar to reverse tr...    33   6.8  

>UniRef50_Q8NKN5 Cluster: Putative uncharacterized protein; n=1;
           uncultured crenarchaeote|Rep: Putative uncharacterized
           protein - uncultured crenarchaeote
          Length = 105

 Score = 34.7 bits (76), Expect = 2.2
 Identities = 18/53 (33%), Positives = 30/53 (56%)
 Frame = -3

Query: 395 SFSNSCLGDRMICPKKLITRSRQMEESLFRMFSCLRMNSFVLMASVMRSLTNY 237
           S SN    ++ I  KK I ++ + ++ L R FS ++ N+F  M S ++  TNY
Sbjct: 6   SMSNENEENKDIDFKKSIEKAAEFQQDLLRQFSTIQYNAFQNMFSSLQGFTNY 58


>UniRef50_UPI0000E4958A Cluster: PREDICTED: similar to
           endonuclease-reverse transcriptase, partial; n=7;
           Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
           endonuclease-reverse transcriptase, partial -
           Strongylocentrotus purpuratus
          Length = 787

 Score = 34.3 bits (75), Expect = 2.9
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 277 NEFILRQLNIRKRLSSICRERVMSFFGHIMRSPRHEL 387
           NE I ++LNI   +     +R + +FGH++R P H L
Sbjct: 425 NEEIRQRLNIPSTICEEITKRCLKWFGHVLRMPHHRL 461


>UniRef50_Q54GS4 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 972

 Score = 33.9 bits (74), Expect = 3.9
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +2

Query: 26  YGHKKWHIFKTRRFRNYKHFYLTYIKMIR-DKFKFNVSKSL*CIKMENGQFLWDLFWYVN 202
           YG+    IF    F+N    +L +I + R D+FK     S      ++ Q LW  F+YV 
Sbjct: 648 YGYLVEDIFNRSNFKNMSKIHLNHIFVNRRDQFKLAYQNS------DDSQ-LWFFFFYVA 700

Query: 203 YAIFIFCSSDFS 238
           ++ F  C + FS
Sbjct: 701 FSQFTQCKNSFS 712


>UniRef50_UPI0000E48997 Cluster: PREDICTED: similar to reverse
           transcriptase-like; n=6; Strongylocentrotus
           purpuratus|Rep: PREDICTED: similar to reverse
           transcriptase-like - Strongylocentrotus purpuratus
          Length = 415

 Score = 33.1 bits (72), Expect = 6.8
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +1

Query: 271 RTNEFILRQLNIRKRLSSICRERVMSFFGHIMRSPRHELEKLIITGRI*GK 423
           RTN  +L++LN  + L        + +FGHI+R     L   II  ++ GK
Sbjct: 308 RTNLSVLQELNTERDLLGKVARLKLGYFGHILRGSGSPLAAQIIESQVEGK 358


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 665,495,551
Number of Sequences: 1657284
Number of extensions: 12782228
Number of successful extensions: 27720
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27716
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55785129165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)