Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31111
         (703 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1165 + 26633371-26633679,26635183-26635276,26635732-266358...    28   6.2  
06_01_0877 + 6728883-6729651,6729989-6730224,6730423-6730704,673...    28   8.3  
02_05_1262 + 35312313-35312343,35312840-35312886,35313614-353136...    28   8.3  

>12_02_1165 +
           26633371-26633679,26635183-26635276,26635732-26635822,
           26636112-26636199,26636300-26636341,26636648-26636809,
           26636915-26637094,26637280-26637447,26637977-26638195
          Length = 450

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
 Frame = +2

Query: 77  KHFYLTY-IK--MIRD-KFKFNVSKSL*CIKMENGQFLWDLFWYVNYAIFIFCSSDFSNL 244
           +HF L + IK  ++ D + KF + K+L      NG+ + +L W +NYA+  F   +  NL
Sbjct: 236 EHFILKFPIKSLVVPDAQLKFIIEKNLNISCWFNGRIVPELIWGLNYALDEFVPREKGNL 295


>06_01_0877 +
           6728883-6729651,6729989-6730224,6730423-6730704,
           6731297-6731335,6731719-6731826,6731873-6732220
          Length = 593

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -2

Query: 285 ELVCSHGLCHEVINKLLKSDEQNINIA*FTYQNKSHRNCPFS 160
           E +   G+    +N  L+ DE  +++   T+Q    + CP+S
Sbjct: 110 EAIKEAGVAWRELNAALEYDESAVSVNGSTHQKSKEKQCPYS 151


>02_05_1262 +
           35312313-35312343,35312840-35312886,35313614-35313660,
           35313740-35313842,35313924-35314691
          Length = 331

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 35  KKWHIFKTRRFRNYKHFYLTYIKMIRDK 118
           KKW     RR  NY  F   ++KM+ +K
Sbjct: 281 KKWRTENIRRKHNYIPFLFNFLKMLAEK 308


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,827,586
Number of Sequences: 37544
Number of extensions: 350605
Number of successful extensions: 726
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)