Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31111
         (703 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69664-5|CAE17882.2|  360|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z70754-4|CAA94774.1|  130|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>Z69664-5|CAE17882.2|  360|Caenorhabditis elegans Hypothetical
           protein K04D7.6 protein.
          Length = 360

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = -1

Query: 169 PVLHFNTL*TFTDIKFELV--SNHFNIR*IKMFIVSETSCFKNMPLFMSIVYGVTL 8
           PVL FNT+ T  D+ F +V  S  F I  I M      +CF+  P+F+ I +G  +
Sbjct: 219 PVL-FNTVITIMDLLFMVVGISQQFPIPYIVM-TTYRYNCFEATPVFILIAFGALM 272


>Z70754-4|CAA94774.1|  130|Caenorhabditis elegans Hypothetical
          protein F58E6.4 protein.
          Length = 130

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -1

Query: 88 IKMFIVSETSCFKNMPLFMSIVYGVTL 8
          + + ++SET  F+  P+F+SI+ G+ L
Sbjct: 1  MSVHLLSETETFEMQPIFISILLGICL 27


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,372,229
Number of Sequences: 27780
Number of extensions: 307117
Number of successful extensions: 649
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)